Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0167 ATGCAACTAACTGTCTTAATTAAAAGCACCGAACCGAACCTCACTCCACCAAAAAAAACGCCACGTTATCTGATTCGATTCTCTGTCAGAAGAATTCAGATAAACAAAACCATGGCGGAATCTGTGGAGCTTCCGAGTCGGTTAGCAATCCTTCCTTTCAGGAACAAGGTCCTCTTACCTGGCGCTATCATCCGAATTCGTTGCACTTCCCCCACCAGTGTGAAGTTGGTGGAACAAGAACTTTGGCAGCGAGAAGATAAGGGTTTGATTGGCATCTTGCCAGTACGTGATGCTGCTGAAACTGAAGTAAAGCCAGTGGGTCCCACTATATCTCAAGATGGTGATACTCTAGACCAGAGCTCAAAAGTTCATGGTGCTTCATCTGATTCTCACAAGCTTGATGCAAAAGCTCAAAATGATGTTGTTCATTGGCATAACAGGGGGGTAGCTGCTCGAGCATTGCACTTGTCAAGGGGAGTGGAGAAACCAAGTGGAAGGGTGACATATATAGTTGTTCTTGAAGGTCTGTGCAGATTTAGTGTCCAAGAACTAAGCACAAGAGGAACTTACCATACTGCAAGGATCTCTTCCCTTGAGATGAATAAGACTGAGATGGAACAGGTGGAGCATGACCCAGATTTCATAATGTTATCTCGCCAATTTAAAGCAACTGCAATGGAGCTTATTTCTGTTCTGGAGCAGAAACAAAAAACTGGTGGAAGGACAAAAGTTCTTTTGGAGACTGTCCCAGTTCATAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATAAGTTTTGAAGAACAGTTATCAATGTTAGATTCCGTTGATGCTAAATTGAGGCTTTCAAAAGCAACTGAATTGGTTGATAGGCACTTACAGTCAATACGTGTAGCTGAAAAAATTACACAAAAGGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTGCGCCAGCAGATGAGGGCAATAAAAGAGGAGCTTGGTGATAATGATGATGATGAGGATGACCTGGCTGCCCTGGAAAGAAAGATGCAAAGTGCAGGAATGCCACAGAGTATCTGGAAGCATGCTCACAGAGAGTTAAGGAGACTAAAAAAAATGCAGCCTCAGCAACCTGGGTATAGTAGTTCACGGGCTTACCTAGATCTTCTTGCTGACCTGCCATGGCAGAAGGCCAGCGAAGAGCATGAAATGGACTTAAAATCTGCACAGGAGCGCCTGGACAGTGATCACTATGGTTTAGCGAAGGTCAAGCAACGGATCATTGAATACTTGGCTGTTCGTAAGCTTAAGCCAGATGCAAGAGGTCCTGTCTTGTGCTTTGTTGGACCACCAGGTGTTGGAAAAACATCACTGGCATCTTCTATTGCTGCTGCTTTGGACAGAAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGTCATAGGAGAACATACATTGGAAGCATGCCTGGGAGGCTCATAGATGGACTAAAGAGAGTAGCTGTTTGCAACCCCGTCATGTTGCTAGATGAAATTGACAAGACGGGTTCTGATGTTCGCGGAGATCCAGCTTCAGCACTGCTTGAGGTTCTTGATCCTGAACAAAATAAAACATTCAACGATCACTATTTGAATGTTCCATTTGATCTATCCAAGGTAATTTTTGTGGCCACCGCAAATAGGGCGCAGCAAATTCCTCCACCACTTCTTGACAGGATGGAGGTCATTGAGCTTCCTGGATATACACCTGAGGAAAAGCTCAAAATAGCCATGAAGCATTTGATTCCAAGAGTTTTGGACCAGCATGGTTTGAGTTCTGAGTATCTTCAGATTCCAGAGGGAATGGTGCAACTTGTTATTCAGAGATATACTAGGGAGGCTGGTGTGCGAAATTTGGAAAGGAATCTAGCTTCCCTGGCTCGTGCTGCTGCAGTAAGAGTAGCAGAGCAAGAACAAGTGGTTCCATTAAACAAAGAGGTACAGGGACTCACTACACCACTTCTGGAGAATAGACTCACCGATGGCGCTGAAGTTGAAATGGAAGTGATACCAATGGATGTCAACAGTCGTGACATTTCGAACACATTTAGGATCACCTCCCCATTGGTTGTTAATGAAGCTATTCTTGAAAAAGTGCTTGGGCCTCCAAAGTTTGATGGACGAGAAGCAGCAGAACGTGTTGCAGCCCCTGGGATATGTGTTGGGCTGGTTTGGACTACTTTTGGTGGAGAAGTTCAGTTTGTGGAGGCTACAGAAATGGTAGGGAAGGGTGATTTGCATCTTACCGGACAACTGGGTGATGTAATCAAAGAATCAGCTCAGATTGCACTGACATGGGTAAGAGCAAGAGCAGCTGATCTTAGACTGGCTTCTGCAGAGGGCATTAATCTGTTGGAGGGTCGTGATATACATATACATTTTCCTGCAGGTGCTATACCGAAAGATGGGCCTTCTGCTGGTGTGACTTTGGTTACAGCATTGGTATCACTTTTCAGTAAGAAAAGAGTGAGATCCGATACAGCTATGACTGGAGAGATGACATTGAGGGGTCTGGTACTACCCGTAGGTGGTATCAAGGATAAGATATTAGCTGCCCATCGATGTGGTATTAAGAGAGTCATCATACCTGAAAGGAACTTGAAGGACTTGGTTGAAGTACCATCCTCGGTGCTCGTCAATTTGGAGATACTACTTGCAAAACGAATGGAAGACGTGCTGGAGCAAGCTCTTGAAGGTGGGTGCCCCTGGAGACACCAGTCAAAGTTGTGA 2778 0.4456 MQLTVLIKSTEPNLTPPKKTPRYLIRFSVRRIQINKTMAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPTSVKLVEQELWQREDKGLIGILPVRDAAETEVKPVGPTISQDGDTLDQSSKVHGASSDSHKLDAKAQNDVVHWHNRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYHTARISSLEMNKTEMEQVEHDPDFIMLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSVDAKLRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLAALERKMQSAGMPQSIWKHAHRELRRLKKMQPQQPGYSSSRAYLDLLADLPWQKASEEHEMDLKSAQERLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALDRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQQIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLDQHGLSSEYLQIPEGMVQLVIQRYTREAGVRNLERNLASLARAAAVRVAEQEQVVPLNKEVQGLTTPLLENRLTDGAEVEMEVIPMDVNSRDISNTFRITSPLVVNEAILEKVLGPPKFDGREAAERVAAPGICVGLVWTTFGGEVQFVEATEMVGKGDLHLTGQLGDVIKESAQIALTWVRARAADLRLASAEGINLLEGRDIHIHFPAGAIPKDGPSAGVTLVTALVSLFSKKRVRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRCGIKRVIIPERNLKDLVEVPSSVLVNLEILLAKRMEDVLEQALEGGCPWRHQSKL* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0167 925 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 818 826 IPR008268 GO:0004176|GO:0004252|GO:0006508
Lja2g0167 925 Pfam ATP-dependent protease La (LON) substrate-binding domain 48 291 IPR003111 -
Lja2g0167 925 Gene3D - 211 334 - -
Lja2g0167 925 SUPERFAMILY PUA domain-like 47 290 IPR015947 -
Lja2g0167 925 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 40 925 IPR027501 GO:0004252|GO:0006515
Lja2g0167 925 CDD AAA 423 584 - -
Lja2g0167 925 Gene3D - 33 199 IPR046336 -
Lja2g0167 925 SUPERFAMILY Ribosomal protein S5 domain 2-like 733 912 IPR020568 -
Lja2g0167 925 Gene3D - 403 581 IPR027417 -
Lja2g0167 925 Pfam ATPase family associated with various cellular activities (AAA) 442 579 IPR003959 GO:0005524|GO:0016887
Lja2g0167 925 ProSiteProfiles Lon N-terminal domain profile. 48 291 IPR003111 -
Lja2g0167 925 Pfam Lon protease (S16) C-terminal proteolytic domain 707 914 IPR008269 GO:0004176|GO:0004252|GO:0006508
Lja2g0167 925 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 38 925 - -
Lja2g0167 925 Gene3D - 732 917 IPR014721 -
Lja2g0167 925 PIRSF Lon_proteas 33 673 IPR004815 GO:0004176|GO:0005524|GO:0006508
Lja2g0167 925 PIRSF Lon_proteas 689 916 IPR004815 GO:0004176|GO:0005524|GO:0006508
Lja2g0167 925 Gene3D - 582 676 - -
Lja2g0167 925 MobiDBLite consensus disorder prediction 105 134 - -
Lja2g0167 925 Gene3D - 342 390 - -
Lja2g0167 925 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 845 864 - -
Lja2g0167 925 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 815 834 - -
Lja2g0167 925 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 868 886 - -
Lja2g0167 925 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 733 749 - -
Lja2g0167 925 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 446 465 - -
Lja2g0167 925 ProSiteProfiles Lon proteolytic domain profile. 730 915 IPR008269 GO:0004176|GO:0004252|GO:0006508
Lja2g0167 925 Coils Coil 326 346 - -
Lja2g0167 925 TIGRFAM lon: endopeptidase La 50 913 IPR004815 GO:0004176|GO:0005524|GO:0006508
Lja2g0167 925 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 38 925 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Lja2g0167 925 SMART AAA_5 438 583 IPR003593 -
Lja2g0167 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 656 IPR027417 -
Lja2g0167 925 SMART lon_5 47 291 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0167 Lja-Chr2 1423793 1432818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0167 K01338 - gmx:100796650 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0167 2 1423793 1432818 Lja2g0167 2 1423793 1432818 ECH