LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g0161	ATGGCAATAACACTTCGGTCTGCAATTTCTTTCGTTAGCAACAAAGAAACCAAAGCTTTTGATTACGTTTCTTACAAAGTTGTAAGTTTTCCAAAAATGAAAGCATCATTTCGTCTCCAAGCAAAGAGTTCCATACAAGAAGCACACTTGAGAAACAAGAATTGGGAGGAGGTTCATCATGCCCCATTGGTTATTCATGCTCCATTGGTTGTTCATGAACATAGTGATTCAAAGAGGGTACCTGTATTTGTGATGCTGCCACTAGAGACGGTGACAGTGGGAGGAACTTTGAATAAGCCAAGGGCAATGAATGCTAGTTTGATGGCCTTGAAGAGTGCAGGGGTTGAGGGAGTGATGGTGGATGTTTGGTGGGGTTTGGTGGAAAAAGATGGACCTTTAAACTACAACTGGGAAGGCTATGCTGAGCTTTTTCAGATGGTGCAAAAGCACGGCTTGAAGGTTCAGGTTGTTATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCCTGCAGCATTCCTCTACCACCTTGGGTGCTGGAAGAAATCGGCAAGAATCCTGACCTGGTTTACACAGACAGATCAGGGAGAAGAAATCCTGAATACATCTCATTGGGCTGTGATTCAATGCCTGTTCTAAGAGGAAGGTCTCCCCTTCAGGTGTACTCTGATTACATGAGGAGCTTCCGCGACAGCTTCGGAGATTATATGGGCAGTGTTATCAGAGAAGTTCAAGTGGGATTGGGTCCTTGTGGGGAGCTGAGATATCCATCATATCCAGAAAGTGAAGGAACCTGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTATGACAAGTACATGAAAGCTTCCTTGGAAGCATCAGCTGAGGCAATTGGGAAGAAAGATTGGGGAAGAAGTGGTCCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAGAGGGAAGGAACATGGAACACTGAATATGGACACTTCTTCCTGGAGTGGTACTCCAATAAACTTCTTGAACATGGTGAGAGTATCCTTGTGGCTGCAAAAGGAATATTTCAAGATTCTGGGGTGAAACTATCTGCCAAAGTAGCTGGAATTCATTGGCATTACAGAGCAAGGTCACATGCAAGTGAACTAAATGCAGGCTACTATAACACAAGGTTTCATGATGGTTACCTACCAATAGCTCAAATGTTTGCAAGACATGGAGTTGTGCTCAATTTCACATGCATGGAAATGAAGGACAGGGAGCAACCTGAACATGCTAATTGCTCCCCCGAAGGATTGGTTCATCAAGTGAAGAATGCAACCACGAGTGCAGGGGCAGAACTTGCGGGAGAGAATGCATTAGAGAGATATGATGCAGGGGCATTTGGTCAAGTTTTGTCAACAAGTAACTCTGGGAGTGGATTGGGTGCATTTACTTATCTAAGAATGAATAAGAGGTTGTTTGAGGGTGATAACTGGCGGCACTTTGCGGGATTCGTAAGAAGCATGTCTGAGGGTGGTCAGAGACAAAGGCTCCCAGTTTCTGATTCCTTTGGGATTAAACTTTATGTTGGACACATCAAAGGAATTGAACAGAAGCAAGATCAAGAGGCTGCTCTTGTGTGA	1623	0.4424	MAITLRSAISFVSNKETKAFDYVSYKVVSFPKMKASFRLQAKSSIQEAHLRNKNWEEVHHAPLVIHAPLVVHEHSDSKRVPVFVMLPLETVTVGGTLNKPRAMNASLMALKSAGVEGVMVDVWWGLVEKDGPLNYNWEGYAELFQMVQKHGLKVQVVMSFHQCGGNVGDSCSIPLPPWVLEEIGKNPDLVYTDRSGRRNPEYISLGCDSMPVLRGRSPLQVYSDYMRSFRDSFGDYMGSVIREVQVGLGPCGELRYPSYPESEGTWRFPGIGEFQCYDKYMKASLEASAEAIGKKDWGRSGPHDSGQYNQFPEDTGFFKREGTWNTEYGHFFLEWYSNKLLEHGESILVAAKGIFQDSGVKLSAKVAGIHWHYRARSHASELNAGYYNTRFHDGYLPIAQMFARHGVVLNFTCMEMKDREQPEHANCSPEGLVHQVKNATTSAGAELAGENALERYDAGAFGQVLSTSNSGSGLGAFTYLRMNKRLFEGDNWRHFAGFVRSMSEGGQRQRLPVSDSFGIKLYVGHIKGIEQKQDQEAALV*	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g0161	540	Gene3D	Glycosidases	70	528	-	-
	Lja2g0161	540	ProSitePatterns	Beta-amylase active site 1.	161	169	IPR018238	GO:0000272\|GO:0016161
	Lja2g0161	540	PANTHER	BETA-AMYLASE	1	538	-	-
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	114	128	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	395	418	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	324	343	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	135	153	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	157	178	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	377	388	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	249	271	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	360	376	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	432	454	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	Pfam	Glycosyl hydrolase family 14	83	498	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	PANTHER	-	1	538	IPR001554	GO:0000272\|GO:0016161
	Lja2g0161	540	SUPERFAMILY	(Trans)glycosidases	78	505	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g0161	Lja-Chr2	1316732	1319750	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g0161	1	540	Glycoside Hydrolase	AT4G17090	69.065	0.0	796

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja2g0161	K01177		-	gmx:100786079	887.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g0161	2	1316732	1319750	Lja2g0161	2	1316732	1319750	ECH