Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0098 ATGAGTAGTCCGAAGGTCAGGGTTGAAGAGAGGGACATTGTTATAGCAAGAGGTGATGGTGGAGAAGAAGAGTCATTCAGTGGTGTTGAGAGATTGAAGAAGGTTGATTCTGGAAGTGTGAAGAGGAGGACCAAATCGTTTCATCCTCCAATCGAAACGCATTGGCATCTTCCTTTAGCAGAAGGAAAAAGAGAGGGTTCTAATTTCTCCATCAAGTCACTGTTGTCTTTTTCGCTCATGAAACTCGGGAGGAGTAAAAGCAAGGAAATGGTTCTACAAGGAGCTCATGATCCGAAGCATGAAGAAATTGTTGAGTCTTTTCGCACAATGCTTTCGCTCGTGGATCTCTTACCACCTAAGCATGACAATTATCATACTCTTCTAAGGTTTCTGCGCATGAATGATTTTGACATGGAAAAGTCCAAAGATATGTTTCGCAATTATCTGAAATGGCGCAAGGAATTTCGAGTAGACATGCTTCCTAAGGAATTCCATTTCACGGAGTACACAGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGACACGGCAGACCTGTGTATATTGAGAGAATTGGGTTGGTAGATCTTGACAAACTGGGGCAAGTAACCACACATGAAAGGTTTATCAGGTATCATGTGTCAGAACAAGAGAAAACACTAAGAGTAAGATTCCCTGCATGTTCACTGGAGGCTAAAAGGCACATAGCATCCACTACAAGTATATTGGATGTCAACGGAATAGGAATGTCTAATTTCTCAAAGCCTGCAAGGTATCTCTTTATGGAGATTCAGAAGATTGATAGCAGTTACTATCCTGAGACTCTAAATAAGCTCTTTATTATTAATGCTGGATCGGGGTTTAAGATGCTGTGGAAAGCAGTGAAGACATTTCTAGATGCACGCACAGAAGCAAAAATTCAAGTGTTGGGTTCTGATTATCTCGGTGTGCTGCTTCAGGCTGTCGATCCAAGCAATTTGCCTACTTTTCTTGGTGGTGACTGCACATGTTCTGAATATGGAGGTTGCCTTATGAGCGATCGAGGGCCCTGGAAAAATCAAGAATTTTTAGAAATGATTCAGGCAGTTTCATCGGGCAAAGAGACCAATGGTCAAAATGAACACGGTGATGAGGCTTCAGAAGATTCCTTGATGCCAAAAAATGTTGACATGCAAAATGAAAATGACTTTAGTAAGAGCCTGGCACTAGAGGAGAGAGCTCGTGCGATGACAGACTCATCATGTAGGTTAGCATTGCAAAAGATTGATCAGCTTGAAGCTGCTCTTAGAGACACAAAAAATCAGAAAATCAAGACACTTGAAGATGCACTTCAGGAGACCAAGATGGCCTTGAAAGAACTTGCACAGCTTAAAGAACAGCCAAAAATGTGA 1401 0.4176 MSSPKVRVEERDIVIARGDGGEEESFSGVERLKKVDSGSVKRRTKSFHPPIETHWHLPLAEGKREGSNFSIKSLLSFSLMKLGRSKSKEMVLQGAHDPKHEEIVESFRTMLSLVDLLPPKHDNYHTLLRFLRMNDFDMEKSKDMFRNYLKWRKEFRVDMLPKEFHFTEYTEVKKCYPHGYHGVDRHGRPVYIERIGLVDLDKLGQVTTHERFIRYHVSEQEKTLRVRFPACSLEAKRHIASTTSILDVNGIGMSNFSKPARYLFMEIQKIDSSYYPETLNKLFIINAGSGFKMLWKAVKTFLDARTEAKIQVLGSDYLGVLLQAVDPSNLPTFLGGDCTCSEYGGCLMSDRGPWKNQEFLEMIQAVSSGKETNGQNEHGDEASEDSLMPKNVDMQNENDFSKSLALEERARAMTDSSCRLALQKIDQLEAALRDTKNQKIKTLEDALQETKMALKELAQLKEQPKM* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0098 466 PRINTS Cellular retinaldehyde-binding protein signature 295 314 - -
Lja2g0098 466 PRINTS Cellular retinaldehyde-binding protein signature 328 337 - -
Lja2g0098 466 PRINTS Cellular retinaldehyde-binding protein signature 126 148 - -
Lja2g0098 466 CDD SEC14 169 336 IPR001251 -
Lja2g0098 466 SMART CRAL_TRIO_N_2 123 148 IPR011074 -
Lja2g0098 466 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 39 463 - -
Lja2g0098 466 Coils Coil 418 463 - -
Lja2g0098 466 Pfam CRAL/TRIO domain 176 336 IPR001251 -
Lja2g0098 466 SUPERFAMILY CRAL/TRIO N-terminal domain 94 161 IPR036273 -
Lja2g0098 466 SMART sec14_4 168 339 IPR001251 -
Lja2g0098 466 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 39 463 - -
Lja2g0098 466 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 168 342 IPR001251 -
Lja2g0098 466 Gene3D - 80 155 - -
Lja2g0098 466 MobiDBLite consensus disorder prediction 368 387 - -
Lja2g0098 466 Gene3D - 156 367 IPR036865 -
Lja2g0098 466 SUPERFAMILY CRAL/TRIO domain 168 362 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0098 Lja-Chr2 763360 766739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0098 101 333 Acyl Lipid Metabolism Gene Families AT5G47730 30.579 1.35e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0098 - - lja:Lj2g3v2002020.1 705.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0098 2 763360 766739 Lja2g0098 2 763360 766739 ECH