Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0073 ATGGATAACATTGGTTTACCACCGACGCCGGGAAAATTGAAGCCGGAAAAGTATCACCCACCGTCCTCCCTTCACCACCACCGTTTCAGGTTATCCAAACTCACACTCTTCTCCACCATTTTCCTCGCTTTCATCCTCTTCTTCTTCATCCTCTCCCCTTCCCCATCCCCTTCCCCCACCTCCCCCAACCAAACCCGCTCCTGGGGCGGCTCCGACTGGGAAAAACGCGTCACCAAATCCGCCCGCCGCAGTTCCTCCTCCTCCCTCACCGTCCTCGTCACCGGCGCCGCCGGCTTCGTCGGCAGCCATGTCTCCCTCGCCTTAAAGCGCCGCGGCGACGGTGTCCTCGGCCTCGACAATTTCAACCGCTACTACGACCCTAACCTCAAACGCGCTCGCCAGAAGCTTCTCTCACGCGCCGGCGTCTTCGTCGTCGAGGGAGACATCAACGATTCACCGCTACTCCACAAGCTCTTCGATGTGGTGCCTTTCACCCATGTCATGCACCTCGCCGCTCAGGCTGGGGTTCGCTACGCCATGAACAACCCTTATTCGTATGTCCACAGCAACATCGCCGGCTTCGTCAATCTTCTTGAAGCTGCCAAATCAGCCAACCCGCAACCCGCCATTGTTTACGCCTCTTCTAGCTCTGTTTACGGGTTGAATTCCAAGGTTCCGTTCTCCGAGAAGGACAGAACGGACCAGCCGGCGAGTCTCTACGCGGCGACGAAGAAGGCCGGTGAAGCAATTGCGCACACTTACAATAACATTTATGGCTTATCCACCACTGGTTTGCGGTTCTTCACGGTGTATGGTCCTTGGGGTCGACCTGACATGGCGTATTTCTTCTTCACCAAGGATATTCTGAAGGGGAAGCAGATTACTGTCTTTGAAGCCCCTGATGGTGGAAGCGTTGCTAGAGACTTCACCTACATTGATGACATTGTGAAGGGGTGTTTAGGGGCTCTGGATACGGCGAAGAAGAGTACTGGTAGTGGAGGTAAGAAGAAGGGGCCTGCACAGTATAGGATTTTCAATTTGGGGAACACTTCGCCGGTGCCGGTGAGTGAGCTTGTGAGCATATTGGAGAAGCTTCTGAAGGTGAAGGCGAAGAGGAAGGTGATGCCAATGCCTAGAAATGGAGATGTGAGGTTTACTCATGCCAATATTAGCAGAGCACAGGGGGAGCTTGGTTACATGCCCACTACTGATTTGGCTACTGGACTGAAGAAGTTTGTGAGGTGGTACATTGACTTTTACTCTCCTAGTAATTACAAGGGTCCTTGGTGA 1290 0.5364 MDNIGLPPTPGKLKPEKYHPPSSLHHHRFRLSKLTLFSTIFLAFILFFFILSPSPSPSPTSPNQTRSWGGSDWEKRVTKSARRSSSSSLTVLVTGAAGFVGSHVSLALKRRGDGVLGLDNFNRYYDPNLKRARQKLLSRAGVFVVEGDINDSPLLHKLFDVVPFTHVMHLAAQAGVRYAMNNPYSYVHSNIAGFVNLLEAAKSANPQPAIVYASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGEAIAHTYNNIYGLSTTGLRFFTVYGPWGRPDMAYFFFTKDILKGKQITVFEAPDGGSVARDFTYIDDIVKGCLGALDTAKKSTGSGGKKKGPAQYRIFNLGNTSPVPVSELVSILEKLLKVKAKRKVMPMPRNGDVRFTHANISRAQGELGYMPTTDLATGLKKFVRWYIDFYSPSNYKGPW* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0073 429 Gene3D - 89 421 - -
Lja2g0073 429 Pfam NAD dependent epimerase/dehydratase family 91 328 IPR001509 -
Lja2g0073 429 PRINTS Nucleotide sugar epimerase signature 117 133 - -
Lja2g0073 429 PRINTS Nucleotide sugar epimerase signature 382 399 - -
Lja2g0073 429 PRINTS Nucleotide sugar epimerase signature 342 357 - -
Lja2g0073 429 PRINTS Nucleotide sugar epimerase signature 307 322 - -
Lja2g0073 429 MobiDBLite consensus disorder prediction 55 74 - -
Lja2g0073 429 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 87 420 IPR036291 -
Lja2g0073 429 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g0073 429 PANTHER UDP-GLUCURONATE 4-EPIMERASE 5 5 426 - -
Lja2g0073 429 PANTHER EPIMERASE-RELATED 5 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0073 Lja-Chr2 544696 546591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0073 6 429 Miscellaneous Gene Families AT4G12250 78.140 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0073 K08679 - gmx:100788035 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0073 2 544696 546591 Lja2g0073 2 544696 546591 ECH