Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0060 ATGGAGATCATGGACTGGCCTGCTTGTACGGATGAATACGAAAAGCTTTTGATACGGATGAGCACCCCAAGGGTTGTCATTGACAATGCTGTTTGCTCCACAGCGACAGTGGTCAAGGTTGATAGTGCTAGAAGACATGGTATTCTATTAGATGCTGTACAAATTCTCACTGATCTCAATCTTTCAATTAAGAAGGCCTATATTTCCTCTGATGGCAAATGGTTCATGGATGTTTTTCATGTCACTGATCAAAACGGAAACATGCTAACTGATGAGAGCGTTTTAAAATACATTGAACAGTCACTTGGGACCATTCATTATGCGAGAACCAATTGCTCAAATGGTCTCACTGCCCTGGAATTAACTGGAACGGATAGAGTTGGTCTTCTATCTGAGGTTTTTGCTGTGCTGGCTGATCTTCAATGTGATGTTGTTGAGGCTAAGGTTTGGACGCACAATGGCCGCATTGCCTCTTTAATCTATGTAAAGGACTGTGATTCTGGTTCCACTATTGAGGATTCCCAGAGAATTAACAACATTGAAGTGCGTTTAAGAAGTGTTTTGAAGGGAGACAATGACATTAGAAGTGCAAAAACTTCTGTCTCTTTGTCTGTCATGCACACGGAAAGAAGGCTTCACCAGATGATGTTCGCAGACCGTGATTACGAGAGGACCCCCATTCTCAAGTTTACCTCTGATAATGCTGTAGTGAATGTCCAAAATTGGGCTGAGAGGGGTTACTCAGTTGTCAATGTTCAATGCAAGGATCGATCCAAGCTATTGTTTGATGTGTTATGCAATTTGACAGACATGGAGTATATTGTATTTCATGCTACTATAAACACCAATGATGGACGAGCATACTTGGAGTTTTATATAAGACACAAGGATGGCACACCAATAAGCTCAGAACCCGAGCGTCATCGTGTGATTCAATGCTTAAAAGCTTCTGTGGAGAGAAGGGCATCTCAGGGTGTTCGATTAGAGTTATGCACAGAAGACAAGCAAGGGCTTCTAGCAGAAGTGATGAGAACTTTCCGAGAGAATGGGCTGAATGTGACTCGGGCTGAGATATCCACTGAAGGGAAAGTGGCTACTAATGAGTTCTATGTAACGGATGCGATTGGAAACATTGTTGACCAAAAAGTAATCGAATCTGTTAGGCAGAGAATTGGGTCAAGCAATTTGGAAGTGAAAGAGGTACCGTTGATGTATCATCACAAGGCGGAGAGAGAGGATGATACAGTTGGAGTTGGTGGGGCAGTGTTGTGGTCTATTGGGAGCCTTGTGAGAAGGAATCTGATCAATTTGGGGCTGATCAAATCATGTTCTTAA 1335 0.4262 MEIMDWPACTDEYEKLLIRMSTPRVVIDNAVCSTATVVKVDSARRHGILLDAVQILTDLNLSIKKAYISSDGKWFMDVFHVTDQNGNMLTDESVLKYIEQSLGTIHYARTNCSNGLTALELTGTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCDSGSTIEDSQRINNIEVRLRSVLKGDNDIRSAKTSVSLSVMHTERRLHQMMFADRDYERTPILKFTSDNAVVNVQNWAERGYSVVNVQCKDRSKLLFDVLCNLTDMEYIVFHATINTNDGRAYLEFYIRHKDGTPISSEPERHRVIQCLKASVERRASQGVRLELCTEDKQGLLAEVMRTFRENGLNVTRAEISTEGKVATNEFYVTDAIGNIVDQKVIESVRQRIGSSNLEVKEVPLMYHHKAEREDDTVGVGGAVLWSIGSLVRRNLINLGLIKSCS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0060 444 SUPERFAMILY ACT-like 32 101 IPR045865 -
Lja2g0060 444 Pfam ACT domain 119 172 IPR002912 -
Lja2g0060 444 Pfam ACT domain 328 390 IPR002912 -
Lja2g0060 444 PANTHER [PROTEIN-PII] URIDYLYLTRANSFERASE-RELATED 4 442 - -
Lja2g0060 444 SUPERFAMILY ACT-like 323 393 IPR045865 -
Lja2g0060 444 CDD ACT_ACR_1 35 106 - -
Lja2g0060 444 ProSiteProfiles ACT domain profile. 327 406 IPR002912 -
Lja2g0060 444 SUPERFAMILY ACT-like 114 184 IPR045865 -
Lja2g0060 444 Gene3D - 116 191 - -
Lja2g0060 444 Gene3D - 325 402 - -
Lja2g0060 444 CDD ACT_ACR_3 247 321 - -
Lja2g0060 444 ProSiteProfiles ACT domain profile. 118 202 IPR002912 -
Lja2g0060 444 ProSiteProfiles ACT domain profile. 37 113 IPR002912 -
Lja2g0060 444 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 4 442 IPR040217 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0060 Lja-Chr2 479689 482773 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0060 - - lja:Lj2g3v2002690.1 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0060 2 479689 482773 Lja2g0060 2 479689 482773 ECH