Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0058 ATGGCTTCTGCGCAATCCCATTGCGCTTCCTCCTTGAGTCTCATACGACGCTCGGAGCCTTCACCTCATTTGGCCAAGATTGTGTTGGTAAAATGCCCTAACAATTCATGGCTTGGAACCAAAATTCTCACCGTGAAACCTCAGCTTTCCGTTTGCAACCGCCGCCCCTTCGCTGCCACCGTCTCCTTCAGTCTCCCCACAGCGAATCCATCGCGTGCTGATTCTCCAGGTGCGGAAATTCCCAAATGGTCTTCTAAGGCTATAAAATCGTTTGCAATGGGGGAGTTGGAGGCTAGGAAACTCAAGTATCCAACTACCGGCACTGAAGCCCTTCTCATGGGGGTTCTTATCGAGGGTACTAATGTAGCTGCTAAATTCTTGCGTGCCAATGGAGTTACACTTTTTAAGGTGCGAGATGAAACCGTGAAGTTACTTGGAAAAGCTGATATGTTTTTCTTCAGCCCTGAGCATCCTCGACTCACTGATGAAGCTCAGAAGGCCCTTGATTGGGCTGTTGATACAAAATTACAATCTGTTGATGGTGGGGAAATTACTACAGTGCACATCATTCTTGGCATTTGGTCTGAAGTGGATTCACCTGGTCACAAGATACTGTCCACCCTTGGCTTTAATGATGAAAAAGCTAAAGAGCTAGAGACCTCAATTTCTAAACCTGGATTTAAGGATGATTGA 693 0.4661 MASAQSHCASSLSLIRRSEPSPHLAKIVLVKCPNNSWLGTKILTVKPQLSVCNRRPFAATVSFSLPTANPSRADSPGAEIPKWSSKAIKSFAMGELEARKLKYPTTGTEALLMGVLIEGTNVAAKFLRANGVTLFKVRDETVKLLGKADMFFFSPEHPRLTDEAQKALDWAVDTKLQSVDGGEITTVHIILGIWSEVDSPGHKILSTLGFNDEKAKELETSISKPGFKDD* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0058 230 SUPERFAMILY Double Clp-N motif 82 215 IPR036628 -
Lja2g0058 230 Pfam Clp amino terminal domain, pathogenicity island component 97 146 IPR004176 -
Lja2g0058 230 Pfam Clp amino terminal domain, pathogenicity island component 183 222 IPR004176 -
Lja2g0058 230 ProSiteProfiles Clp repeat (R) domain profile. 80 225 IPR004176 -
Lja2g0058 230 Gene3D - 82 230 IPR036628 -
Lja2g0058 230 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 13 230 IPR044217 -
Lja2g0058 230 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT2, CHLOROPLASTIC 13 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0058 Lja-Chr2 468826 474723 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0058 - - gmx:100527844 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0058 2 468826 474723 Lja2g0058 2 468826 474723 ECH