Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0046 ATGAGAGTGATTGTGCCATTGCAAGGAGTTGTGCAAGGCACAGGTGGTCTTTTCTGGGGTTCCGTTATTCCTTGTGCTCTCTTCTACTTTCTTCAGCTCTACTTCAGGAACCGCCACCAACCTCACCCTCCTAGCCCTCCTCTGCTTCCCAATCAGGAGGTTTCTGCCGCTTTGCACCGCAGTCTCTCCTCCCCCAGGACTGCCACCGCCTCCGCTCATGTATCCACTCGAGCCAATTCCCTAAGTGTAGATTCTCCTTACTACGTTGGTTTGCACAAGGTCGCTGATAATCCATACCACCAAGTTCATAATCCTACTGGTGTTATTCAGCTCGGCTTGCCCCACAACACTCTATGTGCGGACTTGATTCAAGATTGGATTCGCCATTATGGAACCGCCACTATTATGGGGACACCAACTAATTGCTGTGGACTCAGGATCGCTGGCCTTGCACCTTGTCATGGCCTCATGGAGTTTGAAGTGGCTGTGGCTGAATTCATGTCTCAAGTTTTGGAAAAGCCAATTTTCTTCAACCCCTCACAAATGGTACTAACTGCAGGTGCCGCCCCTGCTATCGAGATTCTAAGCTTCTGCTTAGCAGATAATGGAAATGCATTCCTTGTTCCCACGCCTCATAGTCCTGGCTTTGACGGGGATGTAAAATGGAGAACTGGTGCGGTTATAGTACCTGTTCCCTGCCGCAGCACTGATAACTTCAATCTAAGCATAGCTGCACTTGACCAAGCCTTCAACCAAGCAAAGAAACGTGGTCACAAAGTTCGCGGAATTATAATAACTAACCCCTCAAATCCAGCTGGAAAATTGTTGAATCGGGAAACACTACTTGATCTTCTGGACTTTGCAAGAGAGAAGAACATTCACATAATCTCTAATGAAACGTTTGCAGGCTCTGTTCATGGAAATGAAGAGTTTGTGAGCATGACCGAAATCGTGGAAGCAGAAGTTCATGATCGGGACAGAGTTCACATAGTGTTCGATCTATCAAATGAGCTCTCTGTTCCAGGTTTCCAGGTGGGTGTTATCTACTCCTATAATGAGAATGTCTTGGCTGCTTCCAACAAATTAGCAAGGTTCTCAGCTGTTTCTGCTCCAGCCCAGCGATTGCTTATCTCCATGCTTTCAGATACAAGATTTATACAAACATTCATTGAGACTAAGAAACTGAGGCTGAGGAAAATGTATAATGCATTTGTGGCAGGATTGAAGCAGTTAGAGATTGAGTGCACTAGGAGCAGTGGTGGTTTTTGCTGCTGGGCTGACATGAGCAGGTTAATCCGCTCCTACAGTGAAAAGGGGGAGCTCGAGCTCTGGGATAGATTGCTGAATGTAGCTAAGATCAATGTTACCCCTGGATCCTCTTGTCATTGTATTGAACCCGGATGGTTCAGTTTTTGTTTTACTACATTGACTGAAAAGGATATTCCAGCAGTAATGGAACGGATTCGGATGATTTCTGAGATCACAAAATCACATAGTTGA 1500 0.4593 MRVIVPLQGVVQGTGGLFWGSVIPCALFYFLQLYFRNRHQPHPPSPPLLPNQEVSAALHRSLSSPRTATASAHVSTRANSLSVDSPYYVGLHKVADNPYHQVHNPTGVIQLGLPHNTLCADLIQDWIRHYGTATIMGTPTNCCGLRIAGLAPCHGLMEFEVAVAEFMSQVLEKPIFFNPSQMVLTAGAAPAIEILSFCLADNGNAFLVPTPHSPGFDGDVKWRTGAVIVPVPCRSTDNFNLSIAALDQAFNQAKKRGHKVRGIIITNPSNPAGKLLNRETLLDLLDFAREKNIHIISNETFAGSVHGNEEFVSMTEIVEAEVHDRDRVHIVFDLSNELSVPGFQVGVIYSYNENVLAASNKLARFSAVSAPAQRLLISMLSDTRFIQTFIETKKLRLRKMYNAFVAGLKQLEIECTRSSGGFCCWADMSRLIRSYSEKGELELWDRLLNVAKINVTPGSSCHCIEPGWFSFCFTTLTEKDIPAVMERIRMISEITKSHS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0046 499 CDD AAT_like 155 489 - -
Lja2g0046 499 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 2 495 - -
Lja2g0046 499 PANTHER AMINOTRANSFERASE ACS12-RELATED 2 495 - -
Lja2g0046 499 SUPERFAMILY PLP-dependent transferases 83 489 IPR015424 -
Lja2g0046 499 Pfam Aminotransferase class I and II 149 488 IPR004839 GO:0009058|GO:0030170
Lja2g0046 499 Gene3D Aspartate Aminotransferase, domain 1 97 487 IPR015422 GO:0003824
Lja2g0046 499 Gene3D - 131 382 IPR015421 GO:0003824
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 327 351 - -
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 181 201 - -
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 111 137 - -
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 257 281 - -
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 293 316 - -
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 203 224 - -
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 359 382 - -
Lja2g0046 499 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 144 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0046 Lja-Chr2 371636 374761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0046 K14270 - gmx:100783490 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0046 2 371636 374761 Lja2g0046 2 371636 374761 ECH