Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0035 ATGGACAATTCATCATCATCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCAGTCACAGGCTCAGCAACAGCAGCATGATCATGTGGATCGCTTGATAAACGCCAATGGATTATACAAATCACCTTCTAGAACAATCTGCTCCGACAGGTTCATCCCATGCAGATCTTCTTCCAAATTCGCGCTGTTTGAGTTATCATCTCCGCCGCCGTCATCAGATTCCAGCAGCGCCGCCTACAACAACCTCTTGCGGACGGCGTTGTTCGGCCCCGATGCTCCCATCACCCCCGACAAACGAACCCCTAATATTTTCCGTTACAAGACGGAGACTCGCCACTCCGTACACTCTCTATCTCCGTTCGATGACCCCATGGGCATGGTTTCTTCCTCTGAGGCCAATCATGCCCCTGTAGTGGTTAAGCCCCCTCGTAAGGTTCCTCCTTCACCTTCTAAGATTCTGGATGCTCCTGCACTGCAAGACGATTTTTATCTGAATCTTGTGGACTGGTCTTCCCACAATGTGTTGGCTGTGGCTCTGGGTAACTCTGCTTATTTGTGGAATGCTAGCACCAGCAAGGTAACTACATTATGCGACTTGGGGATTGACGACCTAGTTTGTTCGGTTGGCTGGTCTCAGCGTGGTACACACCTTGCTGTTGGAACTAGCACCGGTAAAGTGCAGATTTGGGATGCATCTCAATGCAAGTTGATAAGAACTATGGAGGGTCATCATTTACGTGTTGGGGCCCTGGCCTGGAGTTCATCTATTTTGTCTTCTGGTAGCAGAGATAAAAACATTTATCAACGAGATATACGTGCACAGGAAGATTTTGTCAGTAAACTGTCTGCACACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCTGGAGGGAATGACAACAGATTGCTTGTTTGGAATCAACATTCAACTATGCCTGTCCTGAAGTACTTAGAGCATACAGCAGCTGTTAAAGCCATTGCTTGGTCTCCTCATGTTCATGGACTTCTTGCGTCAGGTGGAGGAACTGCAGACCGATGCATTCGTTTCTGGAATACCACCACAAATTCACACTTAAGTTGCATGGACACTGGAAGTCAGGTCTGTAATCTTATCTGGTCCAAAAATGTCAATGAACTGGTAAGCACACATGGCTACTCCCAGAACCAGATAAACATTTGGAAATACCCTGCCATGTCAAAGGTAGCAACTCTTACGGGTCATTCTTATAGAGTTCTTTATCTTTCCATCTCTCCTGATGGGCAGACTATTGTCACTGGAGCTGGAGATGAAACTCTTAGGTTTTGGAATGTATTCCCTTCCCAGAAATCTCAGAATACTGAAAGTGGAATTGGAGCATCATCTCTTGGAAGAACTATAATTAGATGA 1413 0.4579 MDNSSSSSSSSSSSSSSSSQSQAQQQQHDHVDRLINANGLYKSPSRTICSDRFIPCRSSSKFALFELSSPPPSSDSSSAAYNNLLRTALFGPDAPITPDKRTPNIFRYKTETRHSVHSLSPFDDPMGMVSSSEANHAPVVVKPPRKVPPSPSKILDAPALQDDFYLNLVDWSSHNVLAVALGNSAYLWNASTSKVTTLCDLGIDDLVCSVGWSQRGTHLAVGTSTGKVQIWDASQCKLIRTMEGHHLRVGALAWSSSILSSGSRDKNIYQRDIRAQEDFVSKLSAHKSEVCGLKWSYDNRELASGGNDNRLLVWNQHSTMPVLKYLEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLIWSKNVNELVSTHGYSQNQINIWKYPAMSKVATLTGHSYRVLYLSISPDGQTIVTGAGDETLRFWNVFPSQKSQNTESGIGASSLGRTIIR* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0035 470 Pfam WD domain, G-beta repeat 280 315 IPR001680 GO:0005515
Lja2g0035 470 Pfam WD domain, G-beta repeat 326 360 IPR001680 GO:0005515
Lja2g0035 470 Pfam WD domain, G-beta repeat 409 445 IPR001680 GO:0005515
Lja2g0035 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 446 - -
Lja2g0035 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 315 IPR001680 GO:0005515
Lja2g0035 470 Gene3D - 141 449 IPR015943 GO:0005515
Lja2g0035 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 315 - -
Lja2g0035 470 PANTHER PROTEIN FIZZY-RELATED 1 28 470 - -
Lja2g0035 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 241 IPR001680 GO:0005515
Lja2g0035 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 454 IPR001680 GO:0005515
Lja2g0035 470 Pfam Anaphase-promoting complex subunit 4 WD40 domain 195 256 IPR024977 -
Lja2g0035 470 ProSitePatterns Trp-Asp (WD) repeats signature. 432 446 IPR019775 -
Lja2g0035 470 SUPERFAMILY WD40 repeat-like 125 445 IPR036322 GO:0005515
Lja2g0035 470 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 28 470 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lja2g0035 470 SMART WD40_4 276 315 IPR001680 GO:0005515
Lja2g0035 470 SMART WD40_4 191 232 IPR001680 GO:0005515
Lja2g0035 470 SMART WD40_4 406 445 IPR001680 GO:0005515
Lja2g0035 470 SMART WD40_4 318 360 IPR001680 GO:0005515
Lja2g0035 470 SMART WD40_4 235 272 IPR001680 GO:0005515
Lja2g0035 470 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0035 Lja-Chr2 312018 318733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0035 270 446 Miscellaneous Gene Families AT5G08390 23.596 7.64e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0035 K03364 - gmx:100780928 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0035 2 312018 318733 Lja2g0035 2 312018 318733 ECH