Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0029 ATGGGTTCAGAAGCTAACAATGGTGATCAGAATCAGAATCAGCTCAAGTTTCTGATCTACGGTCGAACCGGTTGGATTGGCGGTTTATTGGGCAAGCTCTGCGATCAGCAAGGCATCCCATACGCCTACGGTGACGGGAGGCTGGAGAACCGGCCGTCGCTGGAGGCGGACATAGCGGCGGTGAGTCCAACCCACGTGTTCAACGCGGCGGGAGTGACGGGTAGACCCAACGTGGACTGGTGCGAGAGTCACAAGGTTGAGACCATTCGAACCAACGTGGTCGGAACTCTCACGTTGGCTGACGTGTGCCGCCAGAGAGGGTTGATCCTCATCAACTACGCCACCGGCTGCATCTTTGAGTATGATTCTTCTCACCCTCTCGGCTCCGGCGTCGGTTTCAAGGAGGAAGACACTCCCAATTTCATTGGTTCCTTCTACTCCAAGACCAAGGCCATGGTAGAGGATCTATTGAAGAACTACGAGAATGTGTGTACCTTGCGAGTGAGGATGCCAATCTCCTCTGATTTAACCAACCCTCGCAATTTCATCACCAAGATCACTAGGTATGAAAAGGTTGTCAACATCCCCAATTCGATGACCATATTGGATGAGCTTATTCCCATCTCCATCGAGATGGCCAAGAGGAATCTCACTGGTATCTGGAATTTCACTAGCCCTGGTGTGGTCTCTCACAATGAGATTTTGGAAATGTATAGGGACTATGTGGATCCGAATTTTACATATAAGAATTTCACTCTTGAAGAACAAGCTAAGGTAATTGTTGCTCCCAGAAGCAACAATGAGCTTGATGCGTCGAAATTGAAGAAGGAATTCCCTCAGCTCTTGTCCATCAAGGATTCCCTCATCAAGTATGTGTTCGACCCAAATCACAAGGTTGTAGCTTGA 906 0.4912 MGSEANNGDQNQNQLKFLIYGRTGWIGGLLGKLCDQQGIPYAYGDGRLENRPSLEADIAAVSPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRQRGLILINYATGCIFEYDSSHPLGSGVGFKEEDTPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLTNPRNFITKITRYEKVVNIPNSMTILDELIPISIEMAKRNLTGIWNFTSPGVVSHNEILEMYRDYVDPNFTYKNFTLEEQAKVIVAPRSNNELDASKLKKEFPQLLSIKDSLIKYVFDPNHKVVA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0029 301 Pfam RmlD substrate binding domain 16 188 IPR029903 -
Lja2g0029 301 CDD dTDP_HR_like_SDR_e 16 288 - -
Lja2g0029 301 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 9 297 - -
Lja2g0029 301 PANTHER BNAC05G13120D PROTEIN 9 297 - -
Lja2g0029 301 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 288 IPR036291 -
Lja2g0029 301 Gene3D - 4 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0029 Lja-Chr2 260028 262124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0029 K12451 - vvi:100254814 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0029 2 260028 262124 Lja2g0029 2 260028 262124 ECH