Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0027 ATGACTGTTTGGTGGTTGCAGCAGTTGGTTCTGCTTTCTCTTGCTGGGATTCTCTTCTCTCCTGAACTTTGTGCTTCACAGAATGCTGGGAAATACAGTTTCATGCAGGATGCAACTTCAGCTTCAAGAATCTCCTACTATGACTACATTGTGATTGGCGGCGGCACCGCGGGGTGCCCGTTAGCCGCCACCTTGTCCCAGAATTACAGTGTTTTGCTCCTGGAACGTGGCGGTTCCCCTTATGGGAATCCCAACATCACAAACTTAGCTCAATTCGGCGTTGCCCTCACCGACACGTCACCAACCTCTCCCTCTCAGCGCTTTGTCTCCACAGACGGCGTCATCAACTCTAGAGCTCGTGTCCTCGGCGGTGGAAGCTGTTTAAACGCCGGTTTCTACACTCGTGCTAGCCCGCATTATGCCAGGGAGGCTGGTTGGGATGGAAAGTTAGTGAATGAGTCCTACCAATGGGTGGAGCGAGTGGTGGCGTTTGAGCCTCCAATGCGGCAGTGGCAATCAGCTGTTAGGGATGGATTGTTGGAAATTGGGGTGAAGCCTTACAATGGCTTCACTTATGATCATATTACTGGGACTAAAGTTGGAGGCACCATCTTTGACAACCAAGGTCACAGGCACACTGCTGCTGATCTTTTGCAATATGCTAACCCTAGTGGAATTACTCTGCTATTGCATGCCACTGTGCACAAGATCTTGTTCAGGCATAGAGGTGGATCAAGGCAAGCAGCTCATGGAGTGATATTCAGGGATGGAACTGGAGCAGAACACAGGGCATATCTGAATCAAGGGCCCAAGGGCGAGATAATTGTGTCATCCGGTGCACTTGGCAGCCCACAACTTCTGATGTTGAGTGGAATTGGAGCAGCACATCACCTTCAGGAACACAACATTAGTGTGGTGTTGGACCAGCCATTGGTTGGACAGGGTATGTCTGATAACCCAATGAACGCCATCTTTGTCCCCTCTCCGATCCCGGTAGAGATTTCCCTCATTCAGGTTGTCGGCATCACCGCCTTTGGCAGCTACATTGAAGCCGCCAGTGGTGAATACTTCTCTGGTCCTCCTCCAAGAAATGACTACGGAATGTTTTCCCCTAAGATTGGTCAATTCTCCAAGTTGCCTCCAAAGCAAAGGACACCAGAAGCGATGGCGAAAGCAATAGAGTTGATGGGGAGCCTTGAAGAGGCAGCATTCAGAGGCGGGTTCATTCTGGAGAAAATCATGGGTCCCATTTCAACAGGTCACTTGGAGCTTCGAAACCGCGATCCAAATGAGAACCCGTCGGTGACCTTCAACTACTTCCAGGATCCCAGAGACTTGGAGAGATGTGTGCAGGGCCTTAGCACCATCGAGAAAATCATTGAATCCAAGGCTTTCTCTCCCTTTAAGTACAACACCATGCCAGTGTCTATGTTGCTTAACATCACTGCGAATTCTCCTGTTAACTTGTTGCCCAAACACGCGAATTCTTCAATGTCTCTGGAGCAGTTCTGCAAAGACACCGTGATGACCATATGGCACTACCACGGTGGCTGCCAAGTTGGTAGAGTTGTTGATACTGATTACAAAGTTCTTGGTGTAGATGCACTGCGTGTTATTGATGGTTCTACCTTTAATTATTCTCCCGGAACTAATCCTCAAGCCACTGTTATGATGCTTGGAAGGTACATGGGAGTCAAAATATTGAGGGAGAGACTTGCTGCTGAAGAAAGCTAG 1734 0.4913 MTVWWLQQLVLLSLAGILFSPELCASQNAGKYSFMQDATSASRISYYDYIVIGGGTAGCPLAATLSQNYSVLLLERGGSPYGNPNITNLAQFGVALTDTSPTSPSQRFVSTDGVINSRARVLGGGSCLNAGFYTRASPHYAREAGWDGKLVNESYQWVERVVAFEPPMRQWQSAVRDGLLEIGVKPYNGFTYDHITGTKVGGTIFDNQGHRHTAADLLQYANPSGITLLLHATVHKILFRHRGGSRQAAHGVIFRDGTGAEHRAYLNQGPKGEIIVSSGALGSPQLLMLSGIGAAHHLQEHNISVVLDQPLVGQGMSDNPMNAIFVPSPIPVEISLIQVVGITAFGSYIEAASGEYFSGPPPRNDYGMFSPKIGQFSKLPPKQRTPEAMAKAIELMGSLEEAAFRGGFILEKIMGPISTGHLELRNRDPNENPSVTFNYFQDPRDLERCVQGLSTIEKIIESKAFSPFKYNTMPVSMLLNITANSPVNLLPKHANSSMSLEQFCKDTVMTIWHYHGGCQVGRVVDTDYKVLGVDALRVIDGSTFNYSPGTNPQATVMMLGRYMGVKILRERLAAEES* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0027 577 PIRSF Alcohol_oxidase 24 577 IPR012132 GO:0050660
Lja2g0027 577 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Lja2g0027 577 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 517 - -
Lja2g0027 577 Pfam GMC oxidoreductase 47 320 IPR000172 GO:0016614|GO:0050660
Lja2g0027 577 Gene3D - 164 510 - -
Lja2g0027 577 Pfam GMC oxidoreductase 416 561 IPR007867 GO:0016614
Lja2g0027 577 Gene3D - 47 560 IPR036188 -
Lja2g0027 577 PANTHER OSJNBA0019K04.7 PROTEIN 18 573 - -
Lja2g0027 577 SUPERFAMILY FAD/NAD(P)-binding domain 46 570 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0027 Lja-Chr2 245518 249054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0027 3 571 Miscellaneous Gene Families AT5G51950 58.115 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0027 - - gmx:100796752 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0027 2 245518 249054 Lja2g0027 2 245518 249054 ECH