Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0026 ATGGATGAAAGGTTACCAAGCTCCATGGATGATAATGACAAGTTTCACGAGCACAACATGCCGTCTGGTGTCATAACGGCAATAAAGTTTGATGTTTTAACTGGGGAAGATATACGTACGATCTCTGCTTTGGAGATTGAGGCAGCCGGGCAGGTCGTCTGTTCTGATCTCGGACTTCCTAATTCGTCTGAAGTTTGCACCACATGTGGTACCAATGATAAAAAGCTTTGTGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTTCTATTGTGCATCCATATTTTATATCAGAGGCTGCCGAAATCTTGAACAAGATTTGCCCTGCATGTAAATCTATTCGATGTGATTTACTGATCAAGGGTGTTAAATTTCTTTCGGTAGACAAGAAGCTCAATGATTGCAAATATTGTTCTGGAATTAGTATGGGTCGTTACCCAACAATGAAATTCAGAGTTTCCTACAATAATCTCTCCAGAAGTCCCGAAATTATTTCTGAAATAAATGATACAGCCTCAAAGAAAAAGACTTTGGGGCAAAGACTGGCCGCTGACTATTGGGATTTTATTCCTAACGGCTCTGAAGAAGAGGAAAGTCTTGTCAATAGAAGGTTATCACTTTCTCAGGTTCATCATTTGTTAAGTGATGTTGATCCTGACTTTATTGAGAAATATGTTCCAAGAAAGAGTTTGCTTGATCTCAATTACTTCCCTGTGACACCAAATGGTCATCGTGTGACAGAGTTCTCTCATCGACCTTCCAATGGACCGAAATTGAGTTTTGATGACAGGACCAGGGCTTGCAAGAAATTGGTTGATTTCAGAGGTCCAGCCGTTGAGTTAAGCTCTCATGTCATCAATTCCCTAAGTCTCTCTAAGCTAAATCCTGACAAAACACCAAGTAATATGTTTACTGAACTCCAGCAAAGAAAGGTTGGAGAAAATGCTTGCAACTCTTCTGGTTTAAGATGGATGAAAGATGTTGTTCTGGGAAAACGCAATGATTGTTCATTCCGCACTGTAGTTGTTGGTGATCCAGACCTTGCACTCAGTGAAATTGGTGTACCTTGTCAAATTGCAGAAAGTTTGCAAGTTTCTGTGTATGTGAACAGGGAGAATAAGAAAAATTTGCTTGACTGTTGTGAGCTACGCCTGTTAGAGAAGGGACATTTTAAAGTTTGCAGAAAGGGCAGGCCAGTTGTATTGTATAAAAAGAAAGATCTACAGATTGGAGACTTACTTTATAGGCCTCTTACCGATGGGGATAAAGTGTTGATAAATAGGCCTCCTTCCATACATCAACATTCCATGATTTCTCTCTCAGTTAGGGTCCTTCCTATATCTTCTGTGGTATCAATTAACCCTCTTTGTTGTTCGCCACTGCGTGGGGATTTTGATGGTGATTGCCTACATGGATATATTCCACAATCAGTTGCTGCAAGAGTTGAACTTAATGAACTGGTTGCTTTAGATAGGCAATTGATTAATGGGCAAAGTGGTCGGAATCTGCTTTCACTTTCTCAGGATAGTTTAACTGCTGCATATATGTTGATGGAAGATGGGGTCCTTTTGAATCTTTATGAGATTCAACAGCTGCAAATGTTGTGCGATAAAAAGTTGACACCACCACCGTCAATTATAAAAGCTCCTTCAAGAAATAACTCATTGTGGAGTGGAAAGCAATTATTCAGCATGCTCTTGCCTTCTAATTTTGACTACTCTTTTCCTCCAAATGGCGTTTCTGTTAGTGATGGGGAACTTACATCTTCTTTTGAGTCTTCTGGATGGTTACGTGATTCCGAGTGCAACATTTTCCAGAGACTTGTGGAACGTTTTCAAGATAAGACATTAAACCTTTTGTATGATGCTCAAAAAGTTCTTTGTGAGTGGTTGTCTATGACAGGGTTTAGTGTTTCACTCTCGGACCTGTACCTTTCTTCTGACTCATGTGCACGAGAGAACATGATGGAGGAAATCTCCTATGGCTTACAAGAAGCAGAGCAGGCATGCGATTTCAATCAGTTATTGGTGGATCATTACTGTGATTTTCTTTCAGGAAGTCTTCAGGATAGTGACAATGTTGCGTCCATTGATATGGATAGTCTGAATTATGAAAAGCACATATCTGCTGCTCTCAGTGAAGTGTCGGTTGATGCTTTTAGACACATGTTTCGCAATATTCAAAGTTTAGTTGATAAATATGCAAGTAAGGGCAATGCATTCCTTACTATGTTTAAGGCTGGAAGCAAAGGTAATTTACTGAAATTAGTGCAACATTCCATGTGCCTCGGACTGCAGCATTCTCTGGTTCGCTTGTCATATAGAATGCCCCGTGAACTCTCATGTGCTGCTTGGAATAGTGAAAAAGGACTTAATTCAATGCCGATGTTTTCTAATACTCTTAAATCTATCCAGTGTTACATTCCTCATGCTGTGGTTGAAAGCTCTTTCTTGACTGGGTTGAATCCACTTGAATGTTTTGCTCATTCAGTGGCAAATCGTGATAGCTCTTTCAGTGACAATGCGGACCTTCCTGGAACATTGACACGTAGACTTATGTTCTTCATGCGTGATTTGTATCAGGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATACTGATAAGGACTCGTCTTGTGATAGCGGTTTCCAAGAGGGTACTGTTGGTGGTGAACCTGTTGGAGCACTTTCTGCATGTGCTATTTCTGAAGCTGCATACAGCGCTTTGGGTCAACCAATTAGTCTGCTTGAAACATCTCCTTTACTGAATTTAAAAAATGTTCTGGAGTGTGGTTCCAGGAAAAAAAGTGGTGACCAGACAGTGTCTTTATTTTTGTCGGACAAACTTGGTAAACAGAGGTACGGGTTTGAGTATGCAGCCCTAGAAGTGAAGAATTATTTGGAAAGAGTGATGTTCTCAGACATTGTTTCTACTGTCATGATAATGTTCACTCCACAGTCTTCCAGCCTGGAAATTTTCAATCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAATTGTAGCAAGAAGAAAGTTAACAGTGCATTCTGTCATTGAGTCTCTTTACCGGCGATATGAATCCCTAACTAAGGAATCAAAAGTCACTTTTCCCAATTTGAAAATATCAAGCAAGAAGTGCTCTAAGGAAGGTGGATATGCTTCTTTAAATAAAGAAAAGGAGGATGTAGATTGCATCTCTGTCACAATTGTTGAAAGCTCTAGGAGTTCTGCAAAACTGGAGGCTGTTCGGGACTTGATGATACCTTTCCTTCTTGGAACAGTTATAAAAGGATTTCTGGAGATCAAGAAGGTTGATATTCTCTGGAGTAATCGGTCAAAAGTATCAAATTCTTATGCTGGTTCTTCTGGTGAATTATACTTGAGGGTTACTATGTCCAGCGATGGTGACAGTGGAAGATTCTGGGGTGTACTGATTAATCATTGTCACAGAATAATGCCAATGATTGACTGGACACGAAGTCATCCCGATAACATCCATCATTTCTGCTCCGCCTATGGAATCGATGCAGGGCGGCAATATTTTCTCCACAGTTTGGCATCTGCAACAACTGAAACTGGCAAGTCAATCCTTCCTAAGCATCTGCATCTTGTTGCCAATAGTCTGTCAGCTAGTGGAGAGTTTGTGGGATTGAACGCTAAAGGCATCGGGCGACAAAGAAAGCATGCATCCGTATCATCACCCTTTGTGCAAGCATGCTTTTCTAATCCAGGTACTTCGTTTATAAAAGCTGCTAAGTCTGGAGTCTTGGATGATCTTCAGGGATGCCTAGATGCATTGGCTTGGGGAAAGTGTATGTCCATGGGAACAAGTGGACAGTTTGATATCATGCACTCAGAGAAGGTAGAAGAGTTTCCTGAGTCTGCAGATGTGTACAGCCTGCTAATAGCCAACTTTGACCAGCTGAATGATAAGGTTGATATCCCTCATTATCACAACCGCTCATCGAACAAATGTGATTCTGAGTTTAGCCGTAAAAATGGCGGTTATGCCCTGAAAGAGTATAAACAGTCGAAAAGCTTTATAAGAAATTTTGTGACTGTAAATGATATTCAGAAACTGGCTTTTGAATCAAGGTCCATATTGAGCAGGTATTCAATTGATCAGGTAATAAGCGATCATGATAAGATCACAATGCTGCGGGTTTTGCATTTTCATCCTCGTAAAAATGAGAAGCTTGGCTGTGGACCAGCGGACATAAAGGTTGGATGGCATCCTGTACATAAGGATAGCCGCTGCTTCCATATAATACGAAGTGATGAAAGTGTTGAAGATTTTTCATACCGCAAATGCATTCTTCGTGCTCTTGAGATTGTTGATCCGGGCAAGTTCAGGATCCAGAAGAAAAAGTGGCTGGGACAAGATGACATTGTTGAACTAAAAAAGAGTCAGAAGACAAATCATTAG 4449 0.4035 MDERLPSSMDDNDKFHEHNMPSGVITAIKFDVLTGEDIRTISALEIEAAGQVVCSDLGLPNSSEVCTTCGTNDKKLCEGHFGAIKFPFSIVHPYFISEAAEILNKICPACKSIRCDLLIKGVKFLSVDKKLNDCKYCSGISMGRYPTMKFRVSYNNLSRSPEIISEINDTASKKKTLGQRLAADYWDFIPNGSEEEESLVNRRLSLSQVHHLLSDVDPDFIEKYVPRKSLLDLNYFPVTPNGHRVTEFSHRPSNGPKLSFDDRTRACKKLVDFRGPAVELSSHVINSLSLSKLNPDKTPSNMFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCSFRTVVVGDPDLALSEIGVPCQIAESLQVSVYVNRENKKNLLDCCELRLLEKGHFKVCRKGRPVVLYKKKDLQIGDLLYRPLTDGDKVLINRPPSIHQHSMISLSVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVAARVELNELVALDRQLINGQSGRNLLSLSQDSLTAAYMLMEDGVLLNLYEIQQLQMLCDKKLTPPPSIIKAPSRNNSLWSGKQLFSMLLPSNFDYSFPPNGVSVSDGELTSSFESSGWLRDSECNIFQRLVERFQDKTLNLLYDAQKVLCEWLSMTGFSVSLSDLYLSSDSCARENMMEEISYGLQEAEQACDFNQLLVDHYCDFLSGSLQDSDNVASIDMDSLNYEKHISAALSEVSVDAFRHMFRNIQSLVDKYASKGNAFLTMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRMPRELSCAAWNSEKGLNSMPMFSNTLKSIQCYIPHAVVESSFLTGLNPLECFAHSVANRDSSFSDNADLPGTLTRRLMFFMRDLYQAYDGTVRNLYGNQLIQFSYDTDKDSSCDSGFQEGTVGGEPVGALSACAISEAAYSALGQPISLLETSPLLNLKNVLECGSRKKSGDQTVSLFLSDKLGKQRYGFEYAALEVKNYLERVMFSDIVSTVMIMFTPQSSSLEIFNPWVCHFHLDKEIVARRKLTVHSVIESLYRRYESLTKESKVTFPNLKISSKKCSKEGGYASLNKEKEDVDCISVTIVESSRSSAKLEAVRDLMIPFLLGTVIKGFLEIKKVDILWSNRSKVSNSYAGSSGELYLRVTMSSDGDSGRFWGVLINHCHRIMPMIDWTRSHPDNIHHFCSAYGIDAGRQYFLHSLASATTETGKSILPKHLHLVANSLSASGEFVGLNAKGIGRQRKHASVSSPFVQACFSNPGTSFIKAAKSGVLDDLQGCLDALAWGKCMSMGTSGQFDIMHSEKVEEFPESADVYSLLIANFDQLNDKVDIPHYHNRSSNKCDSEFSRKNGGYALKEYKQSKSFIRNFVTVNDIQKLAFESRSILSRYSIDQVISDHDKITMLRVLHFHPRKNEKLGCGPADIKVGWHPVHKDSRCFHIIRSDESVEDFSYRKCILRALEIVDPGKFRIQKKKWLGQDDIVELKKSQKTNH* 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0026 1482 Pfam RNA polymerase Rpb1, domain 4 708 785 IPR007083 GO:0003677|GO:0003899|GO:0006351
Lja2g0026 1482 SMART rpolaneu7 229 517 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lja2g0026 1482 Pfam RNA polymerase Rpb1, domain 3 493 642 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lja2g0026 1482 Gene3D - 326 496 - -
Lja2g0026 1482 Pfam RNA polymerase Rpb1, domain 2 330 487 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lja2g0026 1482 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1364 IPR045867 GO:0003899|GO:0006351
Lja2g0026 1482 CDD RNAP_IV_RPD1_N 33 867 IPR040403 -
Lja2g0026 1482 Gene3D - 646 820 IPR038120 -
Lja2g0026 1482 Gene3D RNA polymerase Rpb1, domain 3 497 644 IPR042102 -
Lja2g0026 1482 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1293 - -
Lja2g0026 1482 Pfam Protein of unknown function (DUF3223) 1374 1446 - -
Lja2g0026 1482 Gene3D RNA polymerase ii 363 415 - -
Lja2g0026 1482 Gene3D - 1357 1449 - -
Lja2g0026 1482 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 12 1364 - -
Lja2g0026 1482 Gene3D RNA polymerase II, clamp domain 15 124 IPR044893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0026 Lja-Chr2 227267 239634 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0026 K16250 - gmx:100796185 2123.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0026 2 227267 239634 Lja2g0026 2 227267 239634 ECH