Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0018 ATGTGCCAATTATCATCTACCTCTAGTTTGTGTGAAAGCAATGAAGGGAATCCAAATCATCATCATGTATCCACAACCAAAACACAGGAAGAGCCTGACATGTTCACCCTTTTGATCCCCAAATCCCCAACAAAATCCCAACAACAAGAAAAGACCCATTATTCTTATTCTTATTCTCTGGCCCTCAATGAAGCAAAATGCATAGTAAACATTGCATGGCCTATGGTCTTAACCGGCCTATTACTTTACTCTCGGTCTATCATTTCCATGCTCTTCCTCGGTCGGGCGGGCGAGCTTGCTCTTGCGGGCGGCTCACTCGCAATTGGATTCGCCAACATCACCGGCTACTCCATTCTCTCAGGCCTCGCCATGGGAATGGAGCCGATATGTGGGCAAGCATTCGGGGCGAGGAGATTCAAACTCCTCGGCCTAACGATGCAGAGGACAGTGATTCTCCTCCTCCTAACTTCAATCTTCATCGCATTCTCATGGCTCAACATGAAGAAAATCTTACTCCTATGCGGCCAGCAAGAAGACATCGCCACCGAAGCTCAATCCTACATTCTCTACTCTCTACCGGATCTCGTCGCGCAATCGCTGCTCCACCCTCTGCGAATCTACCTTCGAAGCCAATCAGTTACTCTGCCATTAACATACTGTGCAGTTCTCTCAATCCTCCTTCACATCCCCATCAACTACCTCCTCGTCTCGGTTCTTCACCTCGGAATCAGAGGCATTGCTTTAGGCGCTGTTTGGACAAATTTCAATCTGGTTATCTCCTTGATTATCTACATCTGGGTTTCTGGGATTCACAAGAAAACATGGACTGGAATCTCCTCTGCTTGCTTCAAAGGTTGGAAAGCGCTTTTGAATCTAGCGATTCCGAGCTGCATTTCGGTTTGCCTCGAATGGTGGTGGTATGAAATCATGATTTTACTCTGCGGTTTGTTGATAAATCCTCATGCAACCGTTGCCTCAATGGGGGTTCTGATTCAAACCACTGCATTGATCTATATTTTCCCATCTTCGTTGAGTTTTGCTGTTTCCACAAGAGTTGGAAACGAACTCGGAGCTGAGAATCCTCACAGAGCGAAGCTCGCAGCGCTAATAGGCCTCTGTTTCAGTTTCGTGTTGGGATTTTCAGCATTGTTCTTTGCGTTTTCTGTGAGGAATGTGTGGGCTTCAATGTTCACAATGGATCCTCAGATAATTGCTCTGACTTCAATGGTGTTGCCGATTATTGGACTCTGTGAGCTCGGAAACTGTCCTCAGACCACGGTTTGCGGCGTTTTGAGGGGGACGGCGAGGCCGAAGCTGGGGGCTAATGTGAACTTGTGTTGCTTCTACTTCGTCGGAATGCCGGTGGCGGTGTGGTTGAGTTTCTTTGTTGGGTTTGATTTCAAAGGCTTGTGGCTGGGTTTGTTGGCGGCTCAGGCGGCGTGTATGGTGACCATGTTGGTGGTTTTGGCTCGGACCAACTGGGAAGGTCAAGCTCAGAGAGCTAAGGAACTCACTTCATTGGATTCTGGTGAAGAAGGAGGAGATGAAGATGAAGATGAAGCTGCAAAACAATGTTCAGATTCATTAGTTTGA 1593 0.4746 MCQLSSTSSLCESNEGNPNHHHVSTTKTQEEPDMFTLLIPKSPTKSQQQEKTHYSYSYSLALNEAKCIVNIAWPMVLTGLLLYSRSIISMLFLGRAGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGARRFKLLGLTMQRTVILLLLTSIFIAFSWLNMKKILLLCGQQEDIATEAQSYILYSLPDLVAQSLLHPLRIYLRSQSVTLPLTYCAVLSILLHIPINYLLVSVLHLGIRGIALGAVWTNFNLVISLIIYIWVSGIHKKTWTGISSACFKGWKALLNLAIPSCISVCLEWWWYEIMILLCGLLINPHATVASMGVLIQTTALIYIFPSSLSFAVSTRVGNELGAENPHRAKLAALIGLCFSFVLGFSALFFAFSVRNVWASMFTMDPQIIALTSMVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANVNLCCFYFVGMPVAVWLSFFVGFDFKGLWLGLLAAQAACMVTMLVVLARTNWEGQAQRAKELTSLDSGEEGGDEDEDEAAKQCSDSLV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0018 530 Pfam MatE 74 234 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g0018 530 Pfam MatE 295 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g0018 530 MobiDBLite consensus disorder prediction 500 530 - -
Lja2g0018 530 PANTHER PROTEIN DETOXIFICATION 43 513 - -
Lja2g0018 530 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 513 - -
Lja2g0018 530 TIGRFAM matE: MATE efflux family protein 74 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g0018 530 CDD MATE_eukaryotic 64 500 IPR045069 GO:0042910|GO:1990961
Lja2g0018 530 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g0018 530 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0018 Lja-Chr2 155686 157731 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0018 K03327 - gmx:100811560 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0018 2 155686 157731 Lja2g0018 2 155686 157731 ECH