Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0005 ATGGGTTACCTCACACTATCCTCCCTCCTCCTTATGCTCACCGCCTCTCTCGTCACACTGACCAGAGCAGCAAACTTTGAGATCGTCAACAACTGCCCCTACACTGTGTGGGCAGCTGCCAGCCCTGGTGGAGGCCGCCGCCTCGACCGCGGCCAGACATGGAACCTGGGGGTCAACGCAGGCACTGCAATGGCCCGTATCTGGGGCCGCACCGGGTGCAACTTCGACGGTGCTGGCCGCGGCCGGTGCCAGACCGGAGACTGCACCGGTGGGCTCAATTGCCAGGGCTGGGGTGTCCCACCAAACACGTTGGCAGAGTTCGCTCTGAACCAATACGGGAACCAAGATTTCTATGACATCTCACTCATCAGTTGCACCGCCGATATCAACGGACAGTGCCCCAATGAGCTGAGGGCCCCCGGTGGATGTAACAACCCTTGCACCGTGTATAAGACTAATGAGTTTTGTTGTACCAATGGACAAGGAACCTGTGGGCCCACTAATTTCTCACGGTTCTTCAAGGACAGGTGCCATGATTCTTACAGCTACCCTCAGGATGATCCCACCAGCACTTTCACTTGCCCTGCTGGATCTAACTACAAAGTTGTGTTCTGTCCTCTGGGATCTCCTCATGTGACCCTTATGATGCCTGGAAATGATACCAGGGGGTACTGA 675 0.5615 MGYLTLSSLLLMLTASLVTLTRAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLGVNAGTAMARIWGRTGCNFDGAGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYGNQDFYDISLISCTADINGQCPNELRAPGGCNNPCTVYKTNEFCCTNGQGTCGPTNFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGSPHVTLMMPGNDTRGY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0005 224 SUPERFAMILY Osmotin, thaumatin-like protein 24 206 IPR037176 -
Lja2g0005 224 PANTHER OSMOTIN-LIKE PROTEIN OSM34 5 123 - -
Lja2g0005 224 CDD TLP-P 26 206 - -
Lja2g0005 224 SMART tha2 26 206 IPR001938 -
Lja2g0005 224 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Lja2g0005 224 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Lja2g0005 224 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Lja2g0005 224 PRINTS Pathogenesis-related protein signature 196 205 IPR001938 -
Lja2g0005 224 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Lja2g0005 224 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Lja2g0005 224 PANTHER OS03G0233200 PROTEIN 5 123 IPR001938 -
Lja2g0005 224 Pfam Thaumatin family 30 206 IPR001938 -
Lja2g0005 224 PIRSF PR5 2 124 IPR001938 -
Lja2g0005 224 PIRSF PR5 123 221 IPR001938 -
Lja2g0005 224 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Lja2g0005 224 ProSiteProfiles Thaumatin family profile. 23 206 IPR001938 -
Lja2g0005 224 PANTHER OS03G0233200 PROTEIN 123 206 IPR001938 -
Lja2g0005 224 Gene3D Thaumatin 23 123 IPR037176 -
Lja2g0005 224 Gene3D Thaumatin 124 207 IPR037176 -
Lja2g0005 224 PANTHER OSMOTIN-LIKE PROTEIN OSM34 123 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0005 Lja-Chr2 59651 60382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0005 4 223 Receptor kinase-like Gene Family AT5G38280 31.061 6.19e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0005 - - gmx:100240704 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0005 2 59651 60382 Lja2g0005 2 59651 60382 ECH