Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6008 ATGAGAGATAACCACCCTCCGCCGCCCACCTCCGACGACGACCACCGATCCTCCTCCCTCCCGGATCTTGCCAGAGGCGGCCAAATCACCGACTCATCCTCCTCCAAAACCCGACCCGGACCCGGCTCATCATCATCATCACTCCCTCAACCGGGTTCCAGCTCGGAGCTCCAGGCACAGTTCCCGGACCAGGTCCTCGAGAACGTCTTGGAAAACGTGCTCCACTTCCTCTCCTCACGCCGCGACCGCAACGCCGCCTCATTGGTGTGCCGCTCCTGGTGCCGCGCCGAGGCGCTCACCCGATCCGAGCTTTTCATCGGGAACTGCTACGCGGTGTCGCCTCGCCGCGCCACCGCCAGGTTCAGCCGCGTCCGGTCTGTTACCGTGAAGGGGAAGCCGCGGTTCGCGGATTTCGATCTGATGCCGGACGATTGGGGGGCCCACTTCGCCCCCTGGGCAACCGCGCTGGCTCAGGCTTATCCATGGCTTGAGAAGATCCACCTCAAGCGCATGTCTGTCACCGATGAAGATCTCGCCGTCGTTGCCGATTCATTCTCCGGCTTCCGTGAGCTTGTCCTCGTTTGCTGCGAGGGCTTCGGCACTCGCGGACTCGCCGCCGTTGCCTCCAAGTGCAGGTTGCTGAGGGTGCTTGAAGTGGTGGAATCCTTGGTGGAGCCGGTATCTGAGGACGAGGTGGATTGGGTGTCGTGTTTTCCAGAGACTCAGACTCATTTGGAGTCTCTTGTTTTCGACTGTGTTGAGTACCCGGTGAATTTTGAGGCTTTGGAGGGGCTGGTAGCGAGGTCACCTGGTTTGAAGAAACTTAGATTGAACCGTTTTGTGTCCATGCCTCAGCTGTACCGGTTAATGCTTCGTGCTCCCCAGCTCACGCATCTTGGAACGGGTTCATTCAGTGACAGTGAGGCTTTGGAACAGGAACCTGATTATGCCTCTGCTTTTGCAGCTTGCAGATCATTGGTTTGTTTGTCTGGATTCAGGGAGATTTGGGCTAATTACCTTCCCGCCATTCTTCCAGTTTGTGCAAATCTCACTTCATTGAATTTGAGCTATGCTGATGTTAATGCAGATCAGCTGAGGTCTGTTATATGCCACTGCCGTAAGCTGCAGATATTGTGGGCTCTTGATTCGATTGGTGATGAAGGCCTTCAGGCAGTGGCTACAACTTGCCATGATCTACGCGAGCTTCGAGTTTTCCCTGTGGATGCGCGGGAGGAGTCTGAAGGTCCAGTTTCTGAGGTTGGTTTTGAAGCAATATCAAAGGGTTGTAGGAAATTGGAATCAATTTTGTTTTTCTGCCAGAGGATGACAAATGCAGCTGTGGTAGCTATGTCAAAGAACTGTCCTGATCTTTTGGTGTTTCGTCTATGTATTATTGGGCGATATCGGCCGGATGCTGTGACTCAAGAACCCATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAGGAAGCTCACTCGACTTGCTGTGTCTGGTTTGCTGACTGATCGGGCTTTTGAGTATATTGGAAGGTATGGGAAATTGGTTAGGACATTGTCAGTTGCCTTTAATGGGGACACTGACCTGGCCCTTAAATATGTGCTAGAAGGGTGCCCTAATATGCAAAAGCTTGAAATCAGGGATTGTCCATTTGGGGATGCAGCTTTGCGATCTGGGTTGCATCATTATTACAACATGAGATTCCTCTGGATGTCGAACTGCAAATTGACGCGCCAAGCTTGCCAAGATGTTGCACGAGCATTGCCCCACCTTGTTGTGGAAGTGATCAACAAGGAAGACGAGGCGGCAGTTGATGATATTGAGTTATTGTACATGTATCGGTCTCTTGATGGGCCGCGGGATGATGCTCCACAAGTTGTTACCATTCTGCATTAG 1896 0.5264 MRDNHPPPPTSDDDHRSSSLPDLARGGQITDSSSSKTRPGPGSSSSSLPQPGSSSELQAQFPDQVLENVLENVLHFLSSRRDRNAASLVCRSWCRAEALTRSELFIGNCYAVSPRRATARFSRVRSVTVKGKPRFADFDLMPDDWGAHFAPWATALAQAYPWLEKIHLKRMSVTDEDLAVVADSFSGFRELVLVCCEGFGTRGLAAVASKCRLLRVLEVVESLVEPVSEDEVDWVSCFPETQTHLESLVFDCVEYPVNFEALEGLVARSPGLKKLRLNRFVSMPQLYRLMLRAPQLTHLGTGSFSDSEALEQEPDYASAFAACRSLVCLSGFREIWANYLPAILPVCANLTSLNLSYADVNADQLRSVICHCRKLQILWALDSIGDEGLQAVATTCHDLRELRVFPVDAREESEGPVSEVGFEAISKGCRKLESILFFCQRMTNAAVVAMSKNCPDLLVFRLCIIGRYRPDAVTQEPMDEGFGAIVMNCRKLTRLAVSGLLTDRAFEYIGRYGKLVRTLSVAFNGDTDLALKYVLEGCPNMQKLEIRDCPFGDAALRSGLHHYYNMRFLWMSNCKLTRQACQDVARALPHLVVEVINKEDEAAVDDIELLYMYRSLDGPRDDAPQVVTILH* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6008 631 MobiDBLite consensus disorder prediction 23 57 - -
Lja1g6008 631 SMART LRR_CC_2 185 210 IPR006553 -
Lja1g6008 631 SMART LRR_CC_2 538 562 IPR006553 -
Lja1g6008 631 SMART LRR_CC_2 489 512 IPR006553 -
Lja1g6008 631 SMART LRR_CC_2 372 395 IPR006553 -
Lja1g6008 631 SMART LRR_CC_2 429 453 IPR006553 -
Lja1g6008 631 Gene3D - 53 101 - -
Lja1g6008 631 PANTHER F-BOX PROTEIN FBX14 51 629 - -
Lja1g6008 631 MobiDBLite consensus disorder prediction 1 57 - -
Lja1g6008 631 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g6008 631 SUPERFAMILY F-box domain 57 96 IPR036047 GO:0005515
Lja1g6008 631 Pfam F-box 63 102 IPR041567 -
Lja1g6008 631 Pfam Transport inhibitor response 1 protein domain 123 168 IPR041101 -
Lja1g6008 631 Gene3D Ribonuclease Inhibitor 103 630 IPR032675 -
Lja1g6008 631 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 51 629 - -
Lja1g6008 631 SUPERFAMILY RNI-like 141 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6008 Lja-Chr1 110936261 110939705 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6008 - - gmx:100807836 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6008 1 110936261 110939705 Lja1g6008 1 110936261 110939705 ECH