Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6003 ATGGTCGGGTCCACGGTTGCGTTAAACCCTACCAAAACCCTCCACAGCAGAATCTCAAACAGCAACCGCATTTCCCCACCACCGGCGTTCCCAACCAGAATCGCTTTCAACCCTAACAAGTTCCGCCGCCCAGCAATCCGCGCTTCCGTGATGCGAAGAGAAGATCAGCAGCAACAACCGTCCTTGGCGGAAGCTCTCCTCAGCGGCACTCGCAAACAGGAGGTTCTCAACGCCATTAGAGCTACCTCCGGCTCTAACTGCCTCTCTGAAACTAATCTCCATTTGACTGTTCCTGGTCTCAAATCCAAAACCCGTGGCAAAGTTCGGGATATTTATGATAGCGGCGACTACCTTGTTTTAGTGACCACGGATCGCCAGAGTGCCTTTGATAGGGTTCTTGCTTCCATTCCTTTCAAGGGCCAGGTTCTTAACCAGACCAGTTTGTGGTGGTTTGAAAGGACTAGGCACATAGTTTCTAATGCAGTTGTATCAGCTCCAGATAAAAATGTCACTATAGCAAAGAAATGTTCAGTTTTCCCAGTTGAGTTTGTTGCTAGAGGGTTTGTCACTGGAAGTACTGATACATCTTTATGGACAGTCTACGATAAAGGCATTCGTAACTATTGTGGAAATGTCCTCCCCGATGGAATGGTTAAAAATCAGAAGTTGCCTAAAATTATACTCACTCCAACTACCAAGGCTGCAGATCATGATGAACCTGTCACTCCAGATGAGATTATAGAAAGGGGACTGATGACTGAAGCTGATTATGCAGAAGCAAGTGAAAAAGCATTAAGCTTGTTTGAGTATGGGCAGAAAGTGGCTTTGGAACATGGCCTCATATTGGTAGACACTAAGTATGAATTTGGCAAGGCAGAGGATGGTTCAATTCTGTTGATTGATGAGGTCCATACTCCTGATTCAAGTAGATATTGGATTGCTAGTTCCTACTTGGAGCGCTTTCAAAATGGTCTTGAGCCTGAAAATGTTGATAAGGAGTTCTTGAGGCTGTGGTTCAAAAGTCACTGCAACCCCTATGAAGATGAGGTCCTTCCTGATGCTCCTGAAGATCTTGTTGTAGAGTTGGCTTGGCGATATATTTTCTTGTATGAGACTATCACAAAATCCAAGTTTGAGGTGCTATTGACTGAGGAGCCAATTCATGAGCGAATTTCACGAAATGTTGCTTATGCACTGTCGTCCTTAAAGTAA 1212 0.4497 MVGSTVALNPTKTLHSRISNSNRISPPPAFPTRIAFNPNKFRRPAIRASVMRREDQQQQPSLAEALLSGTRKQEVLNAIRATSGSNCLSETNLHLTVPGLKSKTRGKVRDIYDSGDYLVLVTTDRQSAFDRVLASIPFKGQVLNQTSLWWFERTRHIVSNAVVSAPDKNVTIAKKCSVFPVEFVARGFVTGSTDTSLWTVYDKGIRNYCGNVLPDGMVKNQKLPKIILTPTTKAADHDEPVTPDEIIERGLMTEADYAEASEKALSLFEYGQKVALEHGLILVDTKYEFGKAEDGSILLIDEVHTPDSSRYWIASSYLERFQNGLEPENVDKEFLRLWFKSHCNPYEDEVLPDAPEDLVVELAWRYIFLYETITKSKFEVLLTEEPIHERISRNVAYALSSLK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6003 403 Pfam SAICAR synthetase 104 349 IPR028923 -
Lja1g6003 403 ProSitePatterns SAICAR synthetase signature 2. 282 290 IPR018236 GO:0004639|GO:0006164
Lja1g6003 403 Gene3D Phosphorylase Kinase; domain 1 90 179 - -
Lja1g6003 403 Gene3D - 180 323 - -
Lja1g6003 403 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g6003 403 CDD SAICAR_synt_Sc 105 374 - -
Lja1g6003 403 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 100 375 IPR028923 -
Lja1g6003 403 ProSitePatterns SAICAR synthetase signature 1. 178 192 IPR018236 GO:0004639|GO:0006164
Lja1g6003 403 SUPERFAMILY SAICAR synthase-like 94 378 - -
Lja1g6003 403 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 42 402 - -
Lja1g6003 403 PANTHER BNAC03G41880D PROTEIN 42 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6003 Lja-Chr1 110862292 110867415 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6003 K01923 - gmx:100801209 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6003 1 110862292 110867415 Lja1g6003 1 110862292 110867415 ECH