Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6000 ATGTTTACCATAAAAGGGTCAGTTGAATCCGATGCTGTGAGATCTATTCCTTCTAACTACATTTGCCCCAAAACTCCAGACGATTCCATAATCTATGAAACACAGAATGTTCCAATCATTGACTTTTCCCTCCTCATCTCCTCCAATCCCAATGAGCGTTCCAAGGCAATCCAACAACTTGGTGATGCCTGTCGTGACTGGGGTTTCTTCATGCTAATCAATCATGGAGTGTCGGAGAAACTGAGGGGTGAGGTGCTTAGATCAACCAAGAGCTTTTTCGATCTGACTGAGGAAGAAAAACGGGAGTTCTCAGGTGAGAATTTATTCGATCCAATACGATGTGGGACAAGCTTCAATGTCATGGTGGACAAGACCCTGTTTTGGAGAGATTATCTCAAGTGTCATGTTCACCCTCACTTCCATGCTCCTTCCAAGCCCCTTGGTTTTAGTGAAACTTTGGAGGAATACATCACAAAGAGCAGGGAGGTGACTGGAGTTTTGCTAAAAGGAATATCACTAAGCTTGGGCCTTGAAGAAAACTACATACATAAAAGGATGAATTTAGAGTCAGGGGCTCACCAGTTGCTGGTAATCAACTTTTACCCACCATGTCCTAAGCCTGAAGATGTAATGGGGCTACCTCCGCACACAGATCATGGGCTTTTGACCCTCCTGATGCAAAATGATCTTGGTGGGCTTCAAATTCAACATAATGATAAGTGGATTCCTATCCAACCTTTACCCAATTCCTTTCTCATCAATACTGGGGATCATTTGGAGATACTCACCAATGGGAAATACAAGAGTGTTGTTCATCGTGCTGTGGTAAATGAAAAAGCTGCTAGAATTTCTGTTGGTACAGCACACGGGCCACCAATTGACTCCATTGTTAGTCCTGCACCGGAGTTGGTTCAAGAGGATCATCCCCCTGCATATCGTGGCATTACATACAGAGATTATTTGATGCTTCAGCAAAGCCAGGAACTGAATAAGAAATCTTGCTTGGATCGAATTCGAATTTGA 1023 0.434 MFTIKGSVESDAVRSIPSNYICPKTPDDSIIYETQNVPIIDFSLLISSNPNERSKAIQQLGDACRDWGFFMLINHGVSEKLRGEVLRSTKSFFDLTEEEKREFSGENLFDPIRCGTSFNVMVDKTLFWRDYLKCHVHPHFHAPSKPLGFSETLEEYITKSREVTGVLLKGISLSLGLEENYIHKRMNLESGAHQLLVINFYPPCPKPEDVMGLPPHTDHGLLTLLMQNDLGGLQIQHNDKWIPIQPLPNSFLINTGDHLEILTNGKYKSVVHRAVVNEKAARISVGTAHGPPIDSIVSPAPELVQEDHPPAYRGITYRDYLMLQQSQELNKKSCLDRIRI* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6000 340 Pfam 2OG-Fe(II) oxygenase superfamily 193 286 IPR044861 -
Lja1g6000 340 Pfam non-haem dioxygenase in morphine synthesis N-terminal 37 139 IPR026992 -
Lja1g6000 340 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 191 291 IPR005123 -
Lja1g6000 340 Gene3D - 3 331 IPR027443 -
Lja1g6000 340 PANTHER OS08G0480200 PROTEIN 24 336 - -
Lja1g6000 340 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 24 336 - -
Lja1g6000 340 SUPERFAMILY Clavaminate synthase-like 12 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6000 Lja-Chr1 110837399 110840050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6000 4 340 Glycosyltransferase AT5G59530 30.347 2.15e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6000 - - gmx:100798911 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g6000 1 110837399 110840050 Lja1g6000 1 110837399 110840050 ECH