Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5988 ATGCAGAAGCGCAGGTGGATTCCGTTGATACTGCTGAGGAAGTTGCTCACTGCAGCCATTTGCTCAATAGCGTTTGTGGCTCTTTTCTCTGTTCATGTTCACATTGTCCCTTCCTCAAAGGATCACAAGTTCAATGACAAGATCACAACGACTCAGGATCTGCAACACTGGACGCAAGAGCTCGCTCCGCCTCATTTATCCAAAGCTTCAGTTCCTCCTCCCAAGTTGAATGGTTCAAGAGGGAATTCGAAATATGAGAAGTTGTGGAAACCTCCGTCAAATCGTGGGTTTCTGCCCTGTACAAAGCCTACACCTAATTACACCTCTCCTGCTAATTCACGAGGATATCTTTTAGTTCATACAAATGGCGGGCTCAACCAAATGCGTTCTGGGATATGTGATATGGTAGCTGTAGCTCGTATCATAAATGCCACTCTTGTAATTCCAGAACTTGATAAAAGATCATTTTGGCAAGATACTAGCAATTTCTCTGATATTTTCGACGAAGAGCATTTTATTAATTCTCTAGCTAATGATGTAAAAATCGTTAAGAAGCTTCCCATAGAACTGGTTAATGCATCCGGAATGGTCATGCAATTCATAAGCTGGTCTGGCAAGGATTACTATGAGAATGAGATTGCCAGGTTATGGGACGATTACCAAGTTATTCATGCATCCAAGTCTGATTCACGGTTAGCAAACAACAATCTACCTCCTGATATTCAGAAGCTTCGCTGCCGAGCTTGTTATGAAGCTCTTCGTTTCTCTCCTCGTATTGAAGAAATGGGAAAATTATTGGTGGAGAGGATGAGGTCAACCGGTCCTTACATTGCATTGCATTTACGCTATGAGAAGGATATGCTTGCATTTAGTGGGTGCACACATGATTTATCTCCAGATGAAGCTGAAGAGCTACGGGTGATCAGAGAGAACACTTCCTATTGGAAAATAAAGGATATTGATCCCGTTGAACAGAGGTCAAAAGGGTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTTACTGCTCTTGGATACCCAACAAAGACTCCAATATATATTGCTGCCGGAGAGATATATGGGGGCGAGTCCCATATGGCTGAGTTCCGTTCCCGCTTTCCCTTGTTAATGAATAAGGAAAAGTTGGCATCCATTGACGAGCTTGAACCCTTTTCTAGTCATGCATCCCAAATGGCTGCTCTTGACTATATTGTATCTATTGAAAGTGATGTATTTATACCTTCTTATTCTGGAAATATGGCTAGGGCCGTTGAAGGTCATCGCCGTTTTCTTGGACGTGGAAGAACAATATCACCAGACAGGAAAGCCCTTGTTCGTCTGTTTGATAAACTCGATCAGGGAACATTGACTGAGGGGAAAAAATTATCAAATAGGATTATTGATCTCCACAGAAGACGACTTGGCTCCCCTAGGAAGAGAAAAGGGCCAATTTCCGGAACAAAGCGCATGGATAGGTTTCGGTCAGAAGAGCCCTTTTATGTTAATCCCTTACCTGATTGTTTATGCCGGACAGAACAATCTCCTTTAAACATCTCTCACATTGTTAAGTAG 1575 0.4248 MQKRRWIPLILLRKLLTAAICSIAFVALFSVHVHIVPSSKDHKFNDKITTTQDLQHWTQELAPPHLSKASVPPPKLNGSRGNSKYEKLWKPPSNRGFLPCTKPTPNYTSPANSRGYLLVHTNGGLNQMRSGICDMVAVARIINATLVIPELDKRSFWQDTSNFSDIFDEEHFINSLANDVKIVKKLPIELVNASGMVMQFISWSGKDYYENEIARLWDDYQVIHASKSDSRLANNNLPPDIQKLRCRACYEALRFSPRIEEMGKLLVERMRSTGPYIALHLRYEKDMLAFSGCTHDLSPDEAEELRVIRENTSYWKIKDIDPVEQRSKGFCPLTPKEVGIFLTALGYPTKTPIYIAAGEIYGGESHMAEFRSRFPLLMNKEKLASIDELEPFSSHASQMAALDYIVSIESDVFIPSYSGNMARAVEGHRRFLGRGRTISPDRKALVRLFDKLDQGTLTEGKKLSNRIIDLHRRRLGSPRKRKGPISGTKRMDRFRSEEPFYVNPLPDCLCRTEQSPLNISHIVK* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5988 524 CDD O-FucT_plant 116 437 IPR024709 -
Lja1g5988 524 Pfam GDP-fucose protein O-fucosyltransferase 116 431 IPR019378 -
Lja1g5988 524 PIRSF UCP009360 1 514 IPR024709 -
Lja1g5988 524 PANTHER OS02G0726500 PROTEIN-RELATED 6 522 - -
Lja1g5988 524 PANTHER AUXIN-INDEPENDENT GROWTH PROMOTER-LIKE PROTEIN 6 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5988 Lja-Chr1 110333142 110339611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5988 16 515 Miscellaneous Gene Families AT1G22460 59.817 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5988 - - gmx:100795727 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5988 1 110333142 110339611 Lja1g5988 1 110333142 110339611 ECH
Lja1g5988 1 110333142 110339611 Lja1g4301 1 55486862 55492205 PCT