Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5960 ATGTCAGGTGGAGGAGCATGCAGCATAGTTTGGTTCAGGAGGGATCTGAGGGTTGAGGATAATCCAGCACTTGCAGCAGGAGTCAGAGCAGGAGCTGTGGTTGCTGTTTTCATCTGGGCACCTGAAGAAGAGGGTCAGTACTACCCTGGAAGGGTCTCAAGGTGGTGGCTCAAGAACAGTTTGGCTACCCTTGATTCTTCTTTGAGAAGCCTTGGCACCCCTCTTATAACTAAGAGATCAACTGATAGTGTTTCTTCTTTGTTGGAGGTTGTTAAGTCCACTGGAGCCACTCAAATCTTTTTCAACCATTTATATGATCCATTGTCACTAGTTAGGGATCACAGAGCAAAGGAGGTTCTGACTGCTCAAGGCATCACCGTACGTTCCTTCAATTCAGATTTATTGTATGAGCCATGGGATGTGAATGATGCTAATGGCCAACCATTCACAACTTTTGATGCTTTTTGGGAAAGATGCCTTACCATGCCTTATGACCCACAAGCACCTCTTCTTCCACCTAAAAGGATTATTCCAGGTGATGCATCAAGGTGCCCTTCTGATACATTGGTGTTTGAAGATGAATCAGAGAAAGCAAGCAATGCGCTTCTTGCTCGAGCATGGTCACCCGGGTGGAGCAATGCAGACAAGGCTTTGACAGCATTTATAAACGGTCCCCTAATTGAGTACTCGAAGAATCGCAGGAAGGCTGACAGTGCCACAACCTCATTCCTCTCCCCGCATTTGCATTTTGGCGAGGTGAGCGTCAAGAAAGTTTTCCATCTTGTCCGAATTAAGCAAGTCCTTTGGGCCAACGAAGGAAACATAGCTGGTGAAGAAAGTGTGAACTTGTTTCTCAAGTCTATTGGCCTTAGAGAGTATTCAAGGTACATCAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTTCTAGGACACCTTAAGTTTTTCCCTTGGGTAGTGAATGAAGGCTATTTCAAGGCTTGGAGACAAGGCAGAACAGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACTGGTTGGTTGCATGATCGGATACGCGTGGTGGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTTTTGGATGCGGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATATCTGGCACTATACCTGATGGCCGTGAACTTGACCGAATAGATAATCCACAGTTTGAGGGGTACAAATGTGATCCAAATGGCGAATATGTACGACGCTGGCTACCTGAACTTTCAAGACTACCAACTGAATGGATACATCATCCATGGAATGCACCAGAGTCTGTATTGCAAGCCGCCGGAATTGAACTTGGGTCAAACTACCCTCTTCCAATTGTTGGAATAGATGCAGCAAAAGCAAGATTGCAGGAAGCACTGTTACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATGGAAAACGGAACCGAGGAAGGGCTTGGAGACTCCTCTGAATCAGCCCCTATTGCTTTTCCTCAAGACATGATAATGGAGGAGGAAAGACATGAACCTGTTAGGAACAATCCCCCTCATGGTACTCGACGCTACCAGGATCAGATGGTGCCAAGCATCACTTCTTCCCATGTGAGAGTGGAAGAGGAAGAAATTGCTTCAGATCTTCGAAACTCAGCACAAGACAACAGAGCTGAAGTGCCAATGAATGTAAACACACAGCAAAATGCAAGAGAGGCAGTGAACCAAGGAGTGTTGCAGACTATAAATAGAAACAACACTCAACTACAGCACAATAACACAGTGTGGCTGAGAAATGCGGCCGAAGATTCTACCGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGAGATGGGGGTGTTGTCCCGGTGTGGTCTCCCCCAGCTTCTAGTTTCTCAGAGCAATTTGTAGATGATGAAAATGGTATAGGAGCTAGTTCATCCTACTTGCAGAGGCATCCTCAGTCTCACCAAATGATGAATTGGACTAGGCTACCTCAAACTGGGTAA 2052 0.4586 MSGGGACSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLATLDSSLRSLGTPLITKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDANGQPFTTFDAFWERCLTMPYDPQAPLLPPKRIIPGDASRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALTAFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRELDRIDNPQFEGYKCDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLQEALLQMWQQEAASRAAMENGTEEGLGDSSESAPIAFPQDMIMEEERHEPVRNNPPHGTRRYQDQMVPSITSSHVRVEEEEIASDLRNSAQDNRAEVPMNVNTQQNAREAVNQGVLQTINRNNTQLQHNNTVWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASSFSEQFVDDENGIGASSSYLQRHPQSHQMMNWTRLPQTG* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5960 683 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Lja1g5960 683 PANTHER CRYPTOCHROME 5 605 IPR002081 -
Lja1g5960 683 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 8 179 IPR036155 -
Lja1g5960 683 Pfam Blue/Ultraviolet sensing protein C terminal 511 628 IPR020978 -
Lja1g5960 683 Gene3D - 135 294 - -
Lja1g5960 683 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Lja1g5960 683 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 135 IPR006050 -
Lja1g5960 683 MobiDBLite consensus disorder prediction 642 683 - -
Lja1g5960 683 PRINTS DNA photolyase signature 144 160 IPR002081 -
Lja1g5960 683 PRINTS DNA photolyase signature 333 349 IPR002081 -
Lja1g5960 683 PRINTS DNA photolyase signature 353 371 IPR002081 -
Lja1g5960 683 PRINTS DNA photolyase signature 392 406 IPR002081 -
Lja1g5960 683 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 7 482 IPR014134 GO:0009785|GO:0009882
Lja1g5960 683 Pfam DNA photolyase 8 163 IPR006050 -
Lja1g5960 683 Pfam FAD binding domain of DNA photolyase 284 481 IPR005101 -
Lja1g5960 683 MobiDBLite consensus disorder prediction 616 683 - -
Lja1g5960 683 Gene3D HUPs 9 207 IPR014729 -
Lja1g5960 683 PANTHER CRYPTOCHROME-1 5 605 - -
Lja1g5960 683 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Lja1g5960 683 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 195 489 IPR036134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5960 Lja-Chr1 109413048 109418929 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5960 K12118 - gmx:100786551 1272.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5960 1 109413048 109418929 Lja1g5960 1 109413048 109418929 ECH