Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5959 ATGCAGAAGCTAGGATTTCCAATCTCCAAGAGCCTCGACCAGTTCAAATCGCTATACGGTTCTGCATCTGGAACTGCAAAACCGTTACACTCTTCGCGTCCTTCCGCAGATTCCATAGCATCTGGAAGTTTCGCGAATCTGAAGCTCACTGCAGAGAAATTGGTGAAAGAACAAGCTTCGGTGAAGACTGATCTTGAGATTGCGAACACTAAGCTGAAGAAATCGTTGGAGAATGTGCACGCATTGGAGGAGAAATTGCAGAATGCGTTTAACGAAAACGCGAAGCTCAAGGTGAAGCAGAAGGAAGATGAGAAACTCTGGAAAGGACTGGAATCGAAGTTCTCGTCTACGAAGACTTTGTGTGGTCAACTTACTGAGACTTTGCAACAGTTGGCTGGTCTGGTTCAGGATGCTGAGAAAGATAAGGAAATGTTGGAAAAGAAACTGTCTTCAAGTTCAGAAGCTCTTGATGATTTGAATAAACAGATGGAAGGATTGTATTTGAAACTAGATTCTGCACAGGAAACAATTAAAACTCGTGATTATGAGCTAGAGAAGCTCAAATTTTCTGCAGAAGAAAGAGAGAAGTTTCATACAGATGAACAGTGCAGAGCTGCCAATGTTATACAAGAGAAGGATACTAAAATAAAAAATTTAGAAGAAATTATAACAGCTGGTAGATTGGATACAGAGAACTTGAACACAAAGATAAGAGAGGTTCAACTTCAGTTAAAAGTCAAAGAAGATGAAATTATGCATCATTTAACCAGTCTGGAGACGTTGGAGAAAGAGAAGAGTGATCTTCAACTGTGTAATGTTCAGCTTACTAAAAAGCTTGACATGTCACTTCAGGAAATAAAAAACCTTGAAAGAGCACATCAGGTGTTGACTGAACACTTGTTAAATTTAGACAAAGAAAGCTTGAACCTTTGGAGCAAGTTTGATGAAATGAACTCTCTCTATGCTTCTTGCTTTGAGTTGGTCCAGCGGGAGAGAGAAACTTTCTCTAAGCATGCTCAAAACCAGTATGGTGAGCTTAATCATAGATTCTTGAGCTTGTCATCAGAAAAGGATGAAATTCAAATGATAAATCACGAGTTAAGAAATAGTGTAAATGAACTTCAGAAAGTTCACAACTCTACTGTAGTCCAACATAAGGAGGACTGTCGATTAGCAGCTGAGAGAATTCAGCATTTGGAGTCAGAGGCTGAAACTTTAATCTCTAAAAAGGCAGAAGCTGATGTCATAATTTCCAAATTAGAGGGGAAAGCTGACACTCTGTTAGAAAACTCTAGGTCATCAGAGAACCAAATGCAAGGTTTGCTTCTGAAAGTTTCAGCATTAGAGAATGAAAGCAAAGAAAATATGGAACGGCTGGAAGCAGAGATATTGAAGAAGTCAGAGGAAATAGATACTTTGCAAAAGGAGATAATAAAACTCGAGCAGCATGCAGATTCTGTTGATAAAGAAGTCACCCAGCTGCATAACACATTAGAGGAAAAAGAGCAGTGTATATTGCAGAATATGCAACAGGAAAAGAAGCTGGGAGACCAGCTTATTGAGAATCAATCATTATTGACTGCTGTTGAGAGTAAACTTTCTGAAGCTAGAAAGCAATATGATCAAATGGTGGAAAATAAGCAGTTGGAATTGTCCAAGCATTTAAAAGAAATATCTCAGAGAAACGATCAGGCTATTAATGACATTAGGAGGAAGTATGAGTTGGAGAAGATGGAAATTGCCAACATGGAAAAAGACAAGGCGGACAAGGCTATTGCAGAAATTGAGGCAAGGTGTAACAAACAACTTGAAGAATGCAAAGAAGAATCAAGGCAGCACTTGATGCGCATTCAAGAAGAACAAACTCAGCTGGTTACGCAACTGCAGGAGGAGCACAACAAGAGACAACTAAGCCTGATAGCCGAGCACAATGAACAGCTAAAGCGTACCCAACTTCAAGCTGAAAATGAACTGAGAGAGAAAGCAATGTTCCTAAGGAGTGATCATGAAGCTCAGATGAAAGCATTGAAGTGTGAGCTTGAAGACGAGTGTCGGAAGCTTGAAGAGGAGTTGCATCTTCAGAAATCAAAAGAAGACAGGCAAAGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCAAAAGAGGATCAAGAAGTGAATTCAAAACAGGATTACTCCATCTCCTCAATTAAGAGAAAGAGTTCTTATGCTGGCAAAATAAATCAGCATGACCCAGACTCTCCTTGCTTTGAAGCAACTGAACCACAAGTGCCAAAATTGGTGAAGAAAGTGGAGAACGTAAAAACAGGAACTGCAATGAATATTCCCAAGCATCATACAAAGGTAACTCGCCGTGAATATGAAGTTGAGACATCTAATGGAAGAACGATTACAAAGAAAAGGAAAAGAAGTACTGTGTTGTTTGAGGACCCAAGAAAACAAAAGGTAAAGACACCAAAAACAAATACCCCTGGAACTGTTGTTAAGAAACAGAGCATGAAGGGAGGAGGTCATAATCGTCCTTCAAATATTGGTGATCTGTTTTCAGAAGGATCTCTGAACCCATATGCGGATGATCCCTATGCATTTGATTAG 2604 0.3971 MQKLGFPISKSLDQFKSLYGSASGTAKPLHSSRPSADSIASGSFANLKLTAEKLVKEQASVKTDLEIANTKLKKSLENVHALEEKLQNAFNENAKLKVKQKEDEKLWKGLESKFSSTKTLCGQLTETLQQLAGLVQDAEKDKEMLEKKLSSSSEALDDLNKQMEGLYLKLDSAQETIKTRDYELEKLKFSAEEREKFHTDEQCRAANVIQEKDTKIKNLEEIITAGRLDTENLNTKIREVQLQLKVKEDEIMHHLTSLETLEKEKSDLQLCNVQLTKKLDMSLQEIKNLERAHQVLTEHLLNLDKESLNLWSKFDEMNSLYASCFELVQRERETFSKHAQNQYGELNHRFLSLSSEKDEIQMINHELRNSVNELQKVHNSTVVQHKEDCRLAAERIQHLESEAETLISKKAEADVIISKLEGKADTLLENSRSSENQMQGLLLKVSALENESKENMERLEAEILKKSEEIDTLQKEIIKLEQHADSVDKEVTQLHNTLEEKEQCILQNMQQEKKLGDQLIENQSLLTAVESKLSEARKQYDQMVENKQLELSKHLKEISQRNDQAINDIRRKYELEKMEIANMEKDKADKAIAEIEARCNKQLEECKEESRQHLMRIQEEQTQLVTQLQEEHNKRQLSLIAEHNEQLKRTQLQAENELREKAMFLRSDHEAQMKALKCELEDECRKLEEELHLQKSKEDRQRALLQLQWKVMSDKPKEDQEVNSKQDYSISSIKRKSSYAGKINQHDPDSPCFEATEPQVPKLVKKVENVKTGTAMNIPKHHTKVTRREYEVETSNGRTITKKRKRSTVLFEDPRKQKVKTPKTNTPGTVVKKQSMKGGGHNRPSNIGDLFSEGSLNPYADDPYAFD* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5959 867 Coils Coil 417 490 - -
Lja1g5959 867 Coils Coil 640 660 - -
Lja1g5959 867 PANTHER SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED 1 860 - -
Lja1g5959 867 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 1 860 - -
Lja1g5959 867 Coils Coil 382 409 - -
Lja1g5959 867 Coils Coil 230 306 - -
Lja1g5959 867 MobiDBLite consensus disorder prediction 784 820 - -
Lja1g5959 867 MobiDBLite consensus disorder prediction 784 867 - -
Lja1g5959 867 Coils Coil 566 623 - -
Lja1g5959 867 Coils Coil 526 546 - -
Lja1g5959 867 Coils Coil 65 99 - -
Lja1g5959 867 Coils Coil 121 176 - -
Lja1g5959 867 Coils Coil 666 686 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5959 - - gmx:100788684 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5959 1 109397761 109404924 Lja1g5959 1 109397761 109404924 ECH