Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5955 ATGGCTGTTGGGGGATTCGCCGCTGATTCTTCAGCCAATGGCGGCGGCTTCAACGGAAAAATAACAATCTCAGTTGTCATCACTTGCATCGTTGCTGCTTCCGGTGGACTCATCTTTGGATATGACTTAGGAATTTCAGGAGGTGTCACTACGATGAAACCATTTCTTGAAAAATTCTTCCCTGATGTGTTGAGAAAGGTTGCAAGCGTCGAAACGAACATGTACTGTGTGTATGATAGCGAGATCTTGACATTATTCACATCCTCCCTTTATCTAGCAGGGCTAGTGTCTACTCTCCTAGCCAGCCGAGTCACCACGACATTGGGTCGGAGAAACACCATGATCTTGGGTGGTTGCATCTTTTTTGCTGGTGGTGCTATTAACGGTGCTGCTGAAAACAAAGCCATGCTCATCTTAGGTCGTATTTTATTGGGTTTTGGGCTCGGTTTCACTAATCAAGCTACCCCATTGTACCTATCAGAAATCGCTCCACCCAAATGGCGAGGTGCGTTCCTCACCGGCTTCAATTTCTTCAATGGAATCGGCGTGGTGGCCGCGAACTGCATAAACTACGCAACCGCCAAGCACACATGGGGGTGGCGTCTCTCCCTCAGCCTCGCCGTCGTCCCCGCCACCATCATGACCCTCGGCGCGTTCCTCATCCACGACACTCCCAGCAGCTTAGTCGACCGCGGCAAGATTGACCAAGCCAGACACGCGCTGCGCAAATCGCGAGGCTCCACCGTCGATGTGGAACCTGAACTGGAGCACGTGATTCTATCAACACATGTTGCAAAAACTATGGAGCAGGAGAGTTTCATGACCATATTTGAGAAGCAGTATCGACCTCAGTTGGTGATGGCGTTTGCTATCCCTTTATCTCAGCAGCTTACTGGGATCAACATTGTGGCGTTTTATGCACCTAATCTGTTTCAATCTGTGGGGTTTGGCAATGACTCTGCATTGCTTTCAGCTATTATATTGGGACTTGTCAACCTTGGTTCTATTTTGGTGTCTGGTGCTGTTGTTGATCGGTTTGGTCGGAGATTCTTGTTCATTGTTGGTGGCATTCAAATGTTTGTCTGTGAGATTGCGGTGGCTGTTGTGCTAGCACTAGAGACAGGGGTACATGGTACAGAACACATGTCAAAAGGCAACACAATACTGGTACTGGTGTTAATGTGCTTCTACGCAGTAGGTTTTGGTGTTTCATGGGGCCCTCTTTGTTGGCTAATTCCAAGTGAGATTTTTCCCTTAAAAATCAGATCCACTGGGCAAAGCATAGCAATTGCTGTGCAGTTCGTAGCCATATTTATTTTATCCCAAACATTCTTGACAATGTTGTGTCACTTTAAGTTTGGGGCTTTCCTATTCTATGCGGGTTGGATTGCAGTGAGCACGCTCTTTGTTTTTCTGTTCTTGCCTGAGACCAAAGGGATTCCTTTGGATTCAATGTACGCAATATGGGGCGAACACTGGTATTGGCGTCGGTTTGTTGTTAAAGAACAAGTTAACCAAGATAATCATCCATGA 1533 0.471 MAVGGFAADSSANGGGFNGKITISVVITCIVAASGGLIFGYDLGISGGVTTMKPFLEKFFPDVLRKVASVETNMYCVYDSEILTLFTSSLYLAGLVSTLLASRVTTTLGRRNTMILGGCIFFAGGAINGAAENKAMLILGRILLGFGLGFTNQATPLYLSEIAPPKWRGAFLTGFNFFNGIGVVAANCINYATAKHTWGWRLSLSLAVVPATIMTLGAFLIHDTPSSLVDRGKIDQARHALRKSRGSTVDVEPELEHVILSTHVAKTMEQESFMTIFEKQYRPQLVMAFAIPLSQQLTGINIVAFYAPNLFQSVGFGNDSALLSAIILGLVNLGSILVSGAVVDRFGRRFLFIVGGIQMFVCEIAVAVVLALETGVHGTEHMSKGNTILVLVLMCFYAVGFGVSWGPLCWLIPSEIFPLKIRSTGQSIAIAVQFVAIFILSQTFLTMLCHFKFGAFLFYAGWIAVSTLFVFLFLPETKGIPLDSMYAIWGEHWYWRRFVVKEQVNQDNHP* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5955 510 Pfam Sugar (and other) transporter 29 489 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lja1g5955 510 ProSitePatterns Sugar transport proteins signature 2. 143 168 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja1g5955 510 PRINTS Sugar transporter signature 36 46 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g5955 510 PRINTS Sugar transporter signature 414 426 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g5955 510 PRINTS Sugar transporter signature 138 157 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g5955 510 PRINTS Sugar transporter signature 295 305 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g5955 510 PRINTS Sugar transporter signature 391 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g5955 510 ProSitePatterns Sugar transport proteins signature 1. 339 356 IPR005829 GO:0016021|GO:0022857|GO:0055085
Lja1g5955 510 SUPERFAMILY MFS general substrate transporter 30 483 IPR036259 -
Lja1g5955 510 Gene3D MFS general substrate transporter like domains 15 492 IPR036259 -
Lja1g5955 510 CDD MFS_STP 31 476 IPR044778 GO:0015145|GO:0015749
Lja1g5955 510 PANTHER SUGAR TRANSPORTER 4 503 - -
Lja1g5955 510 TIGRFAM SP: MFS transporter, sugar porter (SP) family 19 483 IPR003663 GO:0016020|GO:0022857|GO:0055085
Lja1g5955 510 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 478 IPR020846 GO:0022857
Lja1g5955 510 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 4 503 IPR045262 GO:0015144
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5955 Lja-Chr1 109285635 109294828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5955 52 498 Organic Solute Cotransporters AT1G34580 62.889 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5955 K24193 - lja:Lj0g3v0243819.1 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5955 1 109285635 109294828 Lja1g5955 1 109285635 109294828 ECH