Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5953 ATGGCAACACTGAGAGTCCCTCAAACTCCTCCCCCCGTCGCCGATGACTGTGAGCAGCTCCGAAAAGCCTTCTCAGGATGGGGAACTAATGAGGATCTGATCATATCAATCTTGGGTCATAGGAATGCTGCTCAGAGGAAGCTGATCAGGGAAACTTATGCTGAGACTTATGGAGAAGATCTCCTCAAGGCCTTGGACAAAGAGTTGACCAGTGACTTTGAGAGGCTGGTTCACCTTTGGGCACTTGATTCCGCTGAACGTGATGCATTTTTGGCAAATGAAGCAACTAAAAGATGGACTTCAAGCAATCAGGTGCTGGTTGAAATAGCTTGCACTAGGTCCTCTGAACAAATGTTTGCTGTGAGAAAGGCTTATCATGCTCTTTATAAGAAGTCTCTTGAGGAGGATGTTGCTCATCATACAACAGGGGACTTCCGGAAGCTCCTCCTACCTCTCATGAGTTCTTACCGATATGAAGGAGATGAGGTCAACTTGACTCTGGCAAAATCTGAGGCAAAATTACTGCACGAGAAGATTACAGATAAGGCTTATAATGATGACGACCTCATCAGGATTTTGGCTACAAGGAGCAGAGCCCAGATTAATGCTACTTTGAATCACTACAAAGATGCATTTGGAAAAGATATCAACAAGGACCTCAAAGCTGAACCGAAGGATGAGTACCTGTCTTTACTGAGAGCCACTGTCAAGTGCTTGGTCCGTCCTGAGAAGTACTTTGAGAAGTTTATTCGTTTGTCTATCAACAAGCGAGGAACAGATGAAGGAGCCCTTACAAGAGTGGTTGCCACGAGGGCGGAGATTGATTTGAAAATCATTGCAAATGAGTATCAAAGGAGGAGCAGTATCCCTCTTGATCGCGCCATCATCAAAGACACCAACGGGGACTATGAGAAAATGCTTTTGGCACTCTTAGGACATGAAGATGCTTAA 951 0.4511 MATLRVPQTPPPVADDCEQLRKAFSGWGTNEDLIISILGHRNAAQRKLIRETYAETYGEDLLKALDKELTSDFERLVHLWALDSAERDAFLANEATKRWTSSNQVLVEIACTRSSEQMFAVRKAYHALYKKSLEEDVAHHTTGDFRKLLLPLMSSYRYEGDEVNLTLAKSEAKLLHEKITDKAYNDDDLIRILATRSRAQINATLNHYKDAFGKDINKDLKAEPKDEYLSLLRATVKCLVRPEKYFEKFIRLSINKRGTDEGALTRVVATRAEIDLKIIANEYQRRSSIPLDRAIIKDTNGDYEKMLLALLGHEDA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5953 316 Gene3D Annexin 165 240 IPR037104 GO:0005509|GO:0005544
Lja1g5953 316 ProSitePatterns Annexin repeat signature. 258 310 IPR018252 GO:0005509|GO:0005544
Lja1g5953 316 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Lja1g5953 316 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Lja1g5953 316 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Lja1g5953 316 PRINTS Annexin family signature 254 274 IPR001464 GO:0005509|GO:0005544
Lja1g5953 316 PRINTS Annexin family signature 298 311 IPR001464 GO:0005509|GO:0005544
Lja1g5953 316 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Lja1g5953 316 PRINTS Plant annexin signature 119 133 IPR009118 -
Lja1g5953 316 PRINTS Plant annexin signature 161 181 IPR009118 -
Lja1g5953 316 PRINTS Plant annexin signature 226 244 IPR009118 -
Lja1g5953 316 Pfam Annexin 171 233 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 Pfam Annexin 250 310 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 Pfam Annexin 16 78 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 Pfam Annexin 88 152 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 SMART annex3 100 152 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 SMART annex3 258 310 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 SMART annex3 183 231 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 ProSiteProfiles Annexin repeat profile. 241 312 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Lja1g5953 316 PANTHER ANNEXIN D2 8 316 - -
Lja1g5953 316 SUPERFAMILY Annexin 2 315 IPR037104 GO:0005509|GO:0005544
Lja1g5953 316 Gene3D Annexin 241 316 IPR037104 GO:0005509|GO:0005544
Lja1g5953 316 ProSiteProfiles Annexin repeat profile. 166 237 IPR018502 GO:0005509|GO:0005544
Lja1g5953 316 PANTHER ANNEXIN 8 316 - -
Lja1g5953 316 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5953 Lja-Chr1 109251023 109256443 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5953 K17098 - gmx:100784252 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5953 1 109251023 109256443 Lja1g5953 1 109251023 109256443 ECH