Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5951 ATGTTCAACGACAACGCCATGAGAAGGAAGCAACAAGAGCTCGAGCTAGCTTGGCTCAACGCCGCCGCGGCATCTAACGAACCACCACCGCCGCCTCCGCCGTCGTTTTACGACCTCTACCCCAGCCACCACCACCACCACCACATGGTGTCACTCGCGCCGTCGAAATCTTCAACACCGTCGAATCAGTTCGATTTCTACGGCGATGGGGTGTTGTTCGGAGATGACAAGTGGGTGAGTGATGATGACAACAACAACGATGTTGGATTTGGAAGCGTTCACTTGTTGTCTAAGGATTTTTCTGGAATGAGTATCGTGGAGGAGCAAGTGATGATGAACAATCATCACGGTGCCAAAACCACCACCAGAGGGGTGGTGCCAATGGCAATGCCGTCGTCGTTCACGCCGTATGGTTTGGAAGAAGAACTACCGCATCCTCTGTTTCATCAGCGAAACGTGGCGGCCACGAAATCCTCCGCCACTTGGGGTGGTGGTGGTTCTGTTTCTCAGGGTTTAGTCTCTGATGTGAATTGGTCTTTGCCTTCTTCTTCCAAAGGAAGCGCGTTTGATTCTCTCTGCTACGGGAACAGTGAGTGCTGTGGTGGTGATTGTTATGGCGGCGGCGGTGGTGGTTATGCGCGTGTAACTCAGTTTCAGAAGCCATCTTTTGCTGCTTCACCTTCACCTTCACTTTCACCTTCACCCCACTACCCTTATGACCATTTTCTCTTGTCACCGAGAAGATCATCGTTTGAATCGCAACAACCCAAGATTGGTTTGAATCTAAACAATGCTAGACCCTCCTCACGTTGTTTCCCTGCAACGAGAGAATCACCCAACTGGGAACAACAACAACAATGTCAGCAATCTCTGTCTCCAGGAAGAACAGGATTTGACCCTGTAGCGTTTCGGTGTGATAACAGCTTCATCATACAAGGGAAAGACATGAGATCACGCTGTGAAAATGGGTGTAATGGCAATGGCAATCCTGTATGTGGTAGTGGAAGAAAGCATACATATTCCCATTCTCATTCACACCGTGTTGTTGGAGAGGAAGTTCCTCTTCCTCTTCCTCAGGTGGTTGTTTCTCCTCGTGTTCCTGTTTGTAACCATGGAAATAGTAGCAGTGTTGCTGCAGGTGATGTCATGCAGCCATTGCTGCTGAATTTTGGGTCTGTGGCTGAGCTACAAGCTTACATGTACCACATGGCGAAGGATCAGAATGGTTGTCGCTTCTTGCAGACCATGGTTGAAGATGGGACCCCTGAAGATGTTCAGATAGTGTTTGAGGGGGTGAGAGATGTTGTTGTTGAACTCATGATGGACCCTTTTGGAAATTACCTTGTGCAGAAGTTGGTGGAGTTTTGCAGAGATGATCAGAGGTTGCAGATTGTGCTAATGTTGACTAAGGAACCAGGGCAATTGGTCAGAACCTCTTTGAACACACATGGCACTCGGGTGGTTCAGAAGTTGATTGGGAGCCTCAGGTCAAGGCAACAAATTTCATTGGTGAGGTCTGCTATTCAACCTTGTTTTCTTGATCTTGTCAAGGATCTGAATGGAAACCATGTTGTCCAACGTTGCTTGCAGTGCCTTAACAACCAAGAAAACGAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGATATGGCTACTCATCAACACGGGTGCTGTGTACTGCAACGTTGCATTGATACTTCCACGGGAAAATGTCATGATAAGATAGTCAAAGAAATATGCAAACATGCGCTTCTCCTGGCTCAAGATCCATATGGAAATTATGTTGTTCAGTATATCATAGACCTGGAGAACCCAAGTATCACAGCCAAACTGATTTCTATGTTCAAAGGGAACTACATAAACCTCGCCACACAAAAGTTTAGCAGCCACGTGGTTGAAAAATGCCTCAACGAAGTTCCAGAGACCAGATCCAGGATAGTCCAAGAATTGCTGTCTGTTACTCACTTTGAGCAGTTGCTGCAAGACCCATATGCTAACTATGTGATTCAATGTGCTCTCTCAGTGACCAAGGGACCTCTGCATGCATCTTTGGTTGAAGCAGTTCGCCCCCACAAAATCTTGCGAACCAGCCCATATTGCAAGAGGATTTTTTCAAGAAACCTGCTTAAGAAGTGA 2139 0.4698 MFNDNAMRRKQQELELAWLNAAAASNEPPPPPPPSFYDLYPSHHHHHHMVSLAPSKSSTPSNQFDFYGDGVLFGDDKWVSDDDNNNDVGFGSVHLLSKDFSGMSIVEEQVMMNNHHGAKTTTRGVVPMAMPSSFTPYGLEEELPHPLFHQRNVAATKSSATWGGGGSVSQGLVSDVNWSLPSSSKGSAFDSLCYGNSECCGGDCYGGGGGGYARVTQFQKPSFAASPSPSLSPSPHYPYDHFLLSPRRSSFESQQPKIGLNLNNARPSSRCFPATRESPNWEQQQQCQQSLSPGRTGFDPVAFRCDNSFIIQGKDMRSRCENGCNGNGNPVCGSGRKHTYSHSHSHRVVGEEVPLPLPQVVVSPRVPVCNHGNSSSVAAGDVMQPLLLNFGSVAELQAYMYHMAKDQNGCRFLQTMVEDGTPEDVQIVFEGVRDVVVELMMDPFGNYLVQKLVEFCRDDQRLQIVLMLTKEPGQLVRTSLNTHGTRVVQKLIGSLRSRQQISLVRSAIQPCFLDLVKDLNGNHVVQRCLQCLNNQENEFIFDAAVKFCVDMATHQHGCCVLQRCIDTSTGKCHDKIVKEICKHALLLAQDPYGNYVVQYIIDLENPSITAKLISMFKGNYINLATQKFSSHVVEKCLNEVPETRSRIVQELLSVTHFEQLLQDPYANYVIQCALSVTKGPLHASLVEAVRPHKILRTSPYCKRIFSRNLLKK* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5951 712 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 384 712 - -
Lja1g5951 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 395 430 IPR001313 GO:0003723
Lja1g5951 712 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 371 712 IPR033133 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 436 465 IPR001313 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 620 652 IPR001313 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 548 581 IPR001313 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 512 542 IPR001313 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 400 430 IPR001313 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 475 500 IPR001313 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 583 613 IPR001313 GO:0003723
Lja1g5951 712 Pfam Pumilio-family RNA binding repeat 656 676 IPR001313 GO:0003723
Lja1g5951 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 470 505 IPR001313 GO:0003723
Lja1g5951 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 431 467 IPR001313 GO:0003723
Lja1g5951 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 543 578 IPR001313 GO:0003723
Lja1g5951 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 650 687 IPR001313 GO:0003723
Lja1g5951 712 SUPERFAMILY ARM repeat 395 706 IPR016024 -
Lja1g5951 712 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 384 712 - -
Lja1g5951 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 507 542 IPR001313 GO:0003723
Lja1g5951 712 CDD Pumilio 403 707 IPR033712 GO:0003723
Lja1g5951 712 SMART pum_5 543 578 IPR001313 GO:0003723
Lja1g5951 712 SMART pum_5 652 687 IPR001313 GO:0003723
Lja1g5951 712 SMART pum_5 579 614 IPR001313 GO:0003723
Lja1g5951 712 SMART pum_5 507 542 IPR001313 GO:0003723
Lja1g5951 712 SMART pum_5 615 649 IPR001313 GO:0003723
Lja1g5951 712 SMART pum_5 470 505 IPR001313 GO:0003723
Lja1g5951 712 SMART pum_5 395 430 IPR001313 GO:0003723
Lja1g5951 712 SMART pum_5 431 466 IPR001313 GO:0003723
Lja1g5951 712 ProSiteProfiles Pumilio RNA-binding repeat profile. 579 614 IPR001313 GO:0003723
Lja1g5951 712 Gene3D - 389 710 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5951 Lja-Chr1 109168775 109173816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5951 - - mtr:MTR_5g063650 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5951 1 109168775 109173816 Lja1g5951 1 109168775 109173816 ECH