Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5950 ATGGTGAAGATGAAGATGAAGATGAAGATGAAGGCGGAGATGGTGACACTGGTGCTGGTGAACCTGGCGGGGATCATGGAGAGAGCCGACGAGTCACTCCTTCCCGGCGTGTACAAGGAAGTCGGCACAGCGCTTCACACTGACCCCACTGGACTTGGTTCTCTGACTCTGTTTCGCTCCATCGTGCAATCTGCGTGCTACCCTGTTGCTGCGTACCTCGCCACGCGCCATAACCGGGCCCACGTCATCGCGCTCGGTGCTTTTCTCTGGGCTGCCGCCACTTTCCTTGTCGGCTTCTCCTCCACCTTCTTTCAGGTAGCTGTATCGCGAGGTTTAAATGGAATTGGCCTGGCACTAGTCACACCTGCAATTCAATCCCTTGTTGCTGACTCAACTGATGATAACAATCGCGGCATGGCTTTCGGATGGCTTCAACTAACAGGCAATCTTGGCTCAATTATTGGTGGCCTCTTCTCAGTGTTGATAGCTCCATATACAGTGTTTGGTATCGCTGGTTGGAGAATTTCCTTTCATATTGTTGGAGTAATAAGCATTATAGTTGGTGCTTTAGTGTACCTCTTTGCCAACGATCCACACTTTTCGGATAACGGTACAGATAATCGCAATCAAGCTCCGAACAAAACATTTTGGTCAGAAGTAAGAGATCTGGTCCAGGAAGCCAAGTCAGTATCGAAGATTTCATCTTTCCAGATCATTGTCGCACAAGGTGTCACTGGCTCATTTCCGTGGTCTGCTTTGTCATTTGCGCCGATGTGGTTAGAGCTCACCGGATTCTCCCACAAGACAACGGCATTCCTCATAGCTTTATTTGTTATCGCCAGTTCTATTGGGGGTTTGTTTGGAGGTAAGATGGGGGATATCCTCTCCAGGCGTTTTCCGAATTCTGGGAGGATTATTCTTTCACAGATAAGCTCTGGATCAGCAATCCCCCTAGCAGCACTTCTTCTGCTGGGTTTACCGGATGATCCGTCTACAGCAATACCTCATGGTTTGATTCTAATCATTATGGGGCTCTTCATATCTTGGAATGCTCCAGCTACAAACAATCCAATTTTCGCAGAGATAGTTCCAGAGAGAGCGCGAACAAGTGTATATGCCTTGGACCGATCTTTTGAGTCTATACTATCATCATTTGCTCCCCCCACAGTGGGGATTTTGGCTCAGCATGTTTATGGGTATAAGCCTATTCCTGAAGGATCCAGTGAATCTCTCGAGATTTCAACAGATAGAGAGAATGCTGCATCATTGGCCAAGTCTCTTTACACAGCAATAGGAATTCCAATGGCTCTGTGCTGTTTAATCTACTCATTTCTTTATAAGACCTATCCAAGAGACCGGGAACGAGCGAGGATGGAGGTTTTAATAGAATCAGAGATGCAGCAAATTGAATCAGATGGGTTAGCCATTGATAAAGAGATTGCCTCAGAAGAACTGTCTATTAGGGATTATGATGGTGATGGTGTTGATCTTGATCTTGATGATGAAGAGAACATATTGCTCTATAGGCAGTTAACATTCTCCAACTTAGGTGACTAG 1557 0.4644 MVKMKMKMKMKAEMVTLVLVNLAGIMERADESLLPGVYKEVGTALHTDPTGLGSLTLFRSIVQSACYPVAAYLATRHNRAHVIALGAFLWAAATFLVGFSSTFFQVAVSRGLNGIGLALVTPAIQSLVADSTDDNNRGMAFGWLQLTGNLGSIIGGLFSVLIAPYTVFGIAGWRISFHIVGVISIIVGALVYLFANDPHFSDNGTDNRNQAPNKTFWSEVRDLVQEAKSVSKISSFQIIVAQGVTGSFPWSALSFAPMWLELTGFSHKTTAFLIALFVIASSIGGLFGGKMGDILSRRFPNSGRIILSQISSGSAIPLAALLLLGLPDDPSTAIPHGLILIIMGLFISWNAPATNNPIFAEIVPERARTSVYALDRSFESILSSFAPPTVGILAQHVYGYKPIPEGSSESLEISTDRENAASLAKSLYTAIGIPMALCCLIYSFLYKTYPRDRERARMEVLIESEMQQIESDGLAIDKEIASEELSIRDYDGDGVDLDLDDEENILLYRQLTFSNLGD* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5950 518 Gene3D MFS general substrate transporter like domains 9 201 IPR036259 -
Lja1g5950 518 Gene3D MFS general substrate transporter like domains 236 459 IPR036259 -
Lja1g5950 518 PANTHER - 6 478 - -
Lja1g5950 518 ProSiteProfiles Major facilitator superfamily (MFS) profile. 16 450 IPR020846 GO:0022857
Lja1g5950 518 Pfam Major Facilitator Superfamily 22 387 IPR011701 GO:0022857|GO:0055085
Lja1g5950 518 CDD MFS_spinster_like 17 442 IPR044770 -
Lja1g5950 518 SUPERFAMILY MFS general substrate transporter 14 454 IPR036259 -
Lja1g5950 518 PANTHER SPINSTER 6 478 IPR044770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5950 Lja-Chr1 109160386 109164007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5950 - - gmx:100783378 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5950 1 109160386 109164007 Lja1g5950 1 109160386 109164007 ECH