Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5949 ATGGACTCTGGCAACAGTGGAAGTATCTCATCCAGTGGTGATGAAGAATACGATTCATCACGACCTGATCATCATCATCATCAAACACTTCTCCCTTCCACGTTCCTCAATCAACCACCCCAATTTGGTTCCCTCTCACACCCTTCCCTTGTTCCTCTTCATCACAACCATGTCCATAACCATAACCATCCCTCTTTCTTTGATGTTTCATCAACCTACTTTCACTCCCTCTCACAACCCCAACCAAACAACACAAACCTAAATTGCTTCCTAAATCTGGAAACAGGTCCTTCACAAACCCGAAGATCTGAACCCGATTGCACTGCAGGAGCTTCACCATCATCATCCTTGCTTCCACCTCATCATCAAGTCCTTGGTGGCAGTATCGCCGTTGCCGTCGCAACAGACCCGTCGCTACAACTACGCTCCGTCGTCCACGACGACAACGCAAGGGCAGTTTCATCATCTCAAGCCAACGCCACACCGCGAAACCCGAAGAAACGAACCAGAGCATCAAGGAGAGCACCAACCACCGTCCTCACCACGGACACCTCAAACTTCAGAGCCATGGTTCAAGAATTCACCGGAATCCCAGCTCCACCGTTCTCCGGCTCATCTTACTCTCGCCGCCTCGATCTTCTCGCAACCTCCTCATCCTTCAGGTCCAGTAGTACTACTTCCTCCTCTCAATTGGACACAACCAGTTCCTTTTACCCTCTTCGTCCTTCACCACAAAGGGTCATTCAGCATCAGCAAAATCATCAGAATCAGTTGATTTTTCCTTCTTCTTCATCAACGTTGTTGCAGAGTAATAGCCACATGGTTGATGGTTCCACTACCAACAATTCCTCATCTAATAACTACCAACAGCAACAGCAGCAACTACCTCATGATCTGGGTCTAACGGCTTATAACAATAACAACAGCATGTTGAACATGCATAACAACCCTATCCTCGGATTCCACGCTTCACAACAACCTCTTCACGCTTTTGGCATTGGAGGGTTTGGTTCAAAGCCGTTACAATCGCTTGAGGATCTTGGTGTGGGCCAGGGCCACGTGAATAATGCACATCTTGTTGCAACTGAAACTGGTGGTGGTGGTGGTGGTGGTGATGGAGGAGGTAGAAGAGATCCGTTAATGTCGTTGGATGGGAGTTACGGCGGCGGTGGCGGTGGTGGTAATGGTGGGAAAGATGATTCTGGTGGTGGTGGTGGATGCAAGTTGAACTTTTCAGGTGGTGGATCGAGCACATTGAACGGTGGTGACAAGACATTGATGGAGAATAACTCAGCTGGTAGAGGGGAAGGTGCCGGTAGTGGTACTGCAGTTGATTCGTGGATTTGTTCCTCTGATTAG 1359 0.4879 MDSGNSGSISSSGDEEYDSSRPDHHHHQTLLPSTFLNQPPQFGSLSHPSLVPLHHNHVHNHNHPSFFDVSSTYFHSLSQPQPNNTNLNCFLNLETGPSQTRRSEPDCTAGASPSSSLLPPHHQVLGGSIAVAVATDPSLQLRSVVHDDNARAVSSSQANATPRNPKKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPFSGSSYSRRLDLLATSSSFRSSSTTSSSQLDTTSSFYPLRPSPQRVIQHQQNHQNQLIFPSSSSTLLQSNSHMVDGSTTNNSSSNNYQQQQQQLPHDLGLTAYNNNNSMLNMHNNPILGFHASQQPLHAFGIGGFGSKPLQSLEDLGVGQGHVNNAHLVATETGGGGGGGDGGGRRDPLMSLDGSYGGGGGGGNGGKDDSGGGGGCKLNFSGGGSSTLNGGDKTLMENNSAGRGEGAGSGTAVDSWICSSD* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5949 452 Pfam VQ motif 174 201 IPR008889 -
Lja1g5949 452 MobiDBLite consensus disorder prediction 363 400 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 1 15 - -
Lja1g5949 452 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 451 IPR039609 -
Lja1g5949 452 MobiDBLite consensus disorder prediction 1 43 - -
Lja1g5949 452 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 451 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 269 294 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 147 178 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 218 241 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 413 452 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 413 427 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 93 121 - -
Lja1g5949 452 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5949 Lja-Chr1 109121458 109123402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5949 - - gsj:114382008 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5949 1 109121458 109123402 Lja1g5949 1 109121458 109123402 ECH