Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5948 ATGGCAGCTAAGGCCAAGAACAACAACAAGATGGTGAATGAATTGGGTTGTGGTTTCATGGGGAAAATTCTCCAATTCAAAAACCACAGGCTGAGAAACTCATCTGTTCATTCACTACCCATCAAGGCACACAGTGATGATCATGGCAAAAATGAACTCAAGAAGTTTCCAAATGAAGAACCAAAGGTTCCATTAAGAAGAAGTTTCACCGACACAACACTCACTGAGCCACAAAAACAGAGTACAGAACAGAGACTTTCAAAAAAGAGTCATCAAACACCCTCAACACACCAAAAAACCCATCAAAATAGAAGGAATTCAGATGCTGCAAGAAATTCAACATCATCCTCAACTGGTAGTTCAACTTCAAACCACACAAAGGTTCAACAAAACCATGACATGAATGATGAAGTGAAGCTACAGAGAGAGCCCACTGCCAATTCCCTGCAACTTGCTAGAATAAGCACAAGTTACCAGAAAGACAATGATGGCAACAAATCCTCACCCAAAGAGTTTTCTCCTTTGAAACTCACTGGGAACTTGCTTGTGAATCACACCCCAAGAAGAAAGAGTGTAGAATACACCCCTAAAATTTCATCAGAGCTGAATAAAAGAAGCAATTCAAGCAAAGGTGTGATGATGGGGAATATCATGAGGAAGAACAGCAATGATCTTGCACAGCTTCTAACTCAAAGGCAGAGCAGAGACCCTGAGGTGTTGAAGTCAACGGGGAATGAAGCATACAAGAAGGGAAGGTTTGAAGAGGCTCTGGCTTTGTATGATCAAGCAATTGCCCTTGATTCAAATAAAGCAACTTATCATTGCAATAAAAGTGCGGCTTTAATTGGCTTAGGAAGGTTTGAGGAAGCCATTTTTGAGTGTGAGGAATCAATCAGACTAGAGCCTTCATATATCAGAGCCCATAACCGCTTAGCAACAATATACTTCAGGCTAGGAGAAGCTGAAAAAGCATTGGACTGCAATAATTCAACATCATCTGGTGATTCTGTGCTCACTTTCCAAGCTCAGGCTCTTCAAAAGCACATGATCAAATGCAATGAAGCTCGGAAATTCCATGAATGGAGAGTTATACTGAAGGAAACACAGTCTGCAATATCCGTAGGTGCTGATTCAGCTCCTCAGATCTATGCTTTGCAAAGTGAAGCATTGCTAAAGCTAGTGAGATATCAAGAGGCGTATTCCATATACGACAAAATTCCGAAATTTTCACTTGATTGGTGTAACAAGATTTTTGGCCTGGCTACTAGTGCCTACCTCTTGATGATAGGCGCACAGGTTTACTTGACAGCTGGCAGGTTCGAGGATGCTTTGACAGCAGCTCAGCAAGCAGCAAGAGTCGACCCAAGCAACAGAGAAGTGAATGCAGTGTTAAGGAGAGCTAGAGCAGTGACATCAGCTAGAATGAGTGGAAATTTACTCTTCAAGGCCTCAAAATTCACGGAAGCTTGTGCGGTGTACAATGAAGGACTAGAACATGATCCCCAGAACTCAGTTTTGCTATGCAACAGAGCAGCATGTCGCTCTAAGCTAGGCCAATATGAGAAAGCAATTGAAGATTGTAATGCAGCACTTATGGTTGTGCCAGGTTATAGCAAAGCAGTGCTAAGAAGGGCAGATTGCAATGCCAAGTTGGAACACTGGGAAGCTGCCATTCAAGACTATGAAATGCTACTAAGAGAGAAGCCAGGGGATGAGGAAGTGGCCAAGGCTTTGTTTGAGGCTCAGCTCCAACTCAAGATGATACGTGGTGAAGATACTAAGGACTTGAAGTTTGGGTCAAATTTGGTTTTTATTTCAAGTAATGATCGGTTCAGACACTATGTAACTTCACCTGGGATGGCTGTGGTGCTGTTTAGCAACAAGGCAACCCACAAGCAAGTGTTGCTAGTGTTGGAGCAAACCAGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAGATTGAAGACCACCCCTACTTAGCAAAATCAGAAGGTGTGACCTCTGTCCCAGCCTTCAAAATATACAAGAACGGATCAAAGGTTAAAGAGATTTCAGGCAACAAGCACGAGTTGTTAGAAAGATCAGTTAAATTGTACAGCAGCTGA 2109 0.4253 MAAKAKNNNKMVNELGCGFMGKILQFKNHRLRNSSVHSLPIKAHSDDHGKNELKKFPNEEPKVPLRRSFTDTTLTEPQKQSTEQRLSKKSHQTPSTHQKTHQNRRNSDAARNSTSSSTGSSTSNHTKVQQNHDMNDEVKLQREPTANSLQLARISTSYQKDNDGNKSSPKEFSPLKLTGNLLVNHTPRRKSVEYTPKISSELNKRSNSSKGVMMGNIMRKNSNDLAQLLTQRQSRDPEVLKSTGNEAYKKGRFEEALALYDQAIALDSNKATYHCNKSAALIGLGRFEEAIFECEESIRLEPSYIRAHNRLATIYFRLGEAEKALDCNNSTSSGDSVLTFQAQALQKHMIKCNEARKFHEWRVILKETQSAISVGADSAPQIYALQSEALLKLVRYQEAYSIYDKIPKFSLDWCNKIFGLATSAYLLMIGAQVYLTAGRFEDALTAAQQAARVDPSNREVNAVLRRARAVTSARMSGNLLFKASKFTEACAVYNEGLEHDPQNSVLLCNRAACRSKLGQYEKAIEDCNAALMVVPGYSKAVLRRADCNAKLEHWEAAIQDYEMLLREKPGDEEVAKALFEAQLQLKMIRGEDTKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKATHKQVLLVLEQTSKRFPSVNFLKVEIEDHPYLAKSEGVTSVPAFKIYKNGSKVKEISGNKHELLERSVKLYSS* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5948 702 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Lja1g5948 702 ProSiteProfiles TPR repeat profile. 237 270 IPR019734 GO:0005515
Lja1g5948 702 CDD TRX_family 611 694 - -
Lja1g5948 702 Gene3D Glutaredoxin 596 701 - -
Lja1g5948 702 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 1 701 - -
Lja1g5948 702 Gene3D Tetratricopeptide repeat domain 236 589 IPR011990 GO:0005515
Lja1g5948 702 MobiDBLite consensus disorder prediction 68 100 - -
Lja1g5948 702 SMART tpr_5 271 304 IPR019734 GO:0005515
Lja1g5948 702 SMART tpr_5 424 457 IPR019734 GO:0005515
Lja1g5948 702 SMART tpr_5 538 571 IPR019734 GO:0005515
Lja1g5948 702 SMART tpr_5 237 270 IPR019734 GO:0005515
Lja1g5948 702 SMART tpr_5 504 537 IPR019734 GO:0005515
Lja1g5948 702 SMART tpr_5 305 338 IPR019734 GO:0005515
Lja1g5948 702 SMART tpr_5 470 503 IPR019734 GO:0005515
Lja1g5948 702 Pfam Tetratricopeptide repeat 506 535 IPR001440 GO:0005515
Lja1g5948 702 Pfam TPR repeat 244 276 - -
Lja1g5948 702 MobiDBLite consensus disorder prediction 38 209 - -
Lja1g5948 702 SUPERFAMILY Thioredoxin-like 589 692 IPR036249 -
Lja1g5948 702 SUPERFAMILY TPR-like 236 459 IPR011990 GO:0005515
Lja1g5948 702 MobiDBLite consensus disorder prediction 41 66 - -
Lja1g5948 702 MobiDBLite consensus disorder prediction 141 174 - -
Lja1g5948 702 MobiDBLite consensus disorder prediction 107 129 - -
Lja1g5948 702 Pfam Thioredoxin 632 693 IPR013766 -
Lja1g5948 702 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 701 IPR044534 -
Lja1g5948 702 Pfam Tetratricopeptide repeat 431 504 - -
Lja1g5948 702 SUPERFAMILY TPR-like 475 586 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5948 Lja-Chr1 109081096 109084849 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5948 K09527 - gmx:100782846 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5948 1 109081096 109084849 Lja1g5948 1 109081096 109084849 ECH