Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5945 ATGGAAGGGATAATGAGCAAGCTTCGGAACCTGGACGCGTACCCTAAAATCAACGAGGATTTCTACAGCAGAACCCTCTCCGGCGGCGTCATCACCCTCGCTTCCTCCCTCATCATGCTCTTGCTCTTCTTCTCCGAGCTCCGGTTGTATCTCCATGCTGTCACTGAAACCAAGCTCGTTGTAGATACTTCTAGAGGAGAAACGCTGCGTATCAATTTTGATGTTACATTTCCTGCATTACCATGTTCTATAGTCAGTCTTGATGCTATGGATATCAGCGGAGAGCAGCATTTGGATGTGAGACATGATGTCATCAAGAAAAGATTAGACACTCATGGCAATGTGATAGAAACAAGGCAAGATGGGATAGGCTCTCCTACGATTGAAAAGCCCTTGCAAAAACATGGAGGCAGGCTTGACCACAATGAGACTTATTGTGGTTCCTGTTATGGTGCTGAATCGTCAGATGAGGAATGTTGTAATAACTGTGAGGAAGTCCGTGAAGCATATCGAAAGAAAGGTTGGGCACTGTCAAATCCAGATGTAATTGACCAGTGCAAAAGAGAAGGATTCTTACAAAGAATCAAGGATGAAGAAGGTGAAGGGTGCAATGTGTATGGTTTCTTGGAAGTAAATAAGGTGGCAGGGAATTTCCATTTCGCTCCTGGGAAAAGCTTTCAACAATCTGGTGTGCATGTACATGACTTGCTGGCTTTTCAAAAGGACTCATTTAATTTAAGTCACCACATCAACAGATTAGCTTTTGGAGACTATTTCCCTGGTGTTGTGAATCCTCTCGATCGTGTGCATTGGACACAAGACACGCCAAGTGGGATGTATCAATATTTTATTAAGGTTGTGCCTACTGTATACACTGACGTGAGTGGCCATACCATCCAGTCAAACCAGTTCTCGGTTACAGAACACTTCAGGACAGCGGATGTGGGCCGACTGCAGTCCCTCCCTGGAGTTTTCTTCTTCTATGACCTTTCTCCAATCAAGGTTACATTTACAGAAGAACATGTCTCGTTCTTACATTTTCTTACTAATGTGTGTGCCATAGTTGGAGGTGTTTTTACTGTTTCTGGAATAGTAGATTCATTCATCTATCATGGTCAAAAGGCTATCAAGAAGAAGATGGAACTCGGTAAATTTAGCTGA 1161 0.4341 MEGIMSKLRNLDAYPKINEDFYSRTLSGGVITLASSLIMLLLFFSELRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSIVSLDAMDISGEQHLDVRHDVIKKRLDTHGNVIETRQDGIGSPTIEKPLQKHGGRLDHNETYCGSCYGAESSDEECCNNCEEVREAYRKKGWALSNPDVIDQCKREGFLQRIKDEEGEGCNVYGFLEVNKVAGNFHFAPGKSFQQSGVHVHDLLAFQKDSFNLSHHINRLAFGDYFPGVVNPLDRVHWTQDTPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRTADVGRLQSLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIVDSFIYHGQKAIKKKMELGKFS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5945 386 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 8 97 IPR039542 -
Lja1g5945 386 PANTHER ENDOPLASMIC RETICULUM VESICLE TRANSPORTER PROTEIN 1 385 - -
Lja1g5945 386 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 385 IPR045888 -
Lja1g5945 386 Pfam Endoplasmic reticulum vesicle transporter 149 366 IPR012936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5945 Lja-Chr1 108967122 108983253 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5945 K20367 - gmx:100782309 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5945 1 108967122 108983253 Lja1g5945 1 108967122 108983253 ECH