Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5935 ATGACGAGATGTATCAACCTCAAAACATGTCTTTTCAACTTGATTATCTTCACCATATTTGTTATCACCTATGGTGGGAGATTAAATCAAAATCCTGAGTTTAAAGTGAAAGCAGTTAATCTGGGTGGTTGGCTGGTTACTGAAGGTTGGATGAAACCTTCTCTCTTCGATGGAATTCCAAATAAAGACTTCTTGGATGGAACTGGTCTTCAATTCAAGTCTGTTACAACAGGGAAGTATCTCTGTGCAGAGTCTGGAGGAGGAACTATCCTTGTTGCAAATCGCTCAAGTGCTTCGGGTTGGGAAACATTTTCATTGTGGAGGATAAATGAGAATACTTTCAGATTCAGGGTATTCAACAAACAGTTTGTGGGGTTAGATGGGATTAACGTGGTTGCTGTGACAAACACTTCCACTGATTCTGCAACTTTTCATGTCATTAAGGAAAGTGGCAACTCAAGCCTTGTTCGCATCAAAGCATCAAATGGATACTTCTTGCAGGCAAAAACAGAGGTTCTAGTAACTGCTGATGTATCAGAGGTCAGGGGATGGGGAGAAGACGACCCAACTGTTTTTGATATGAATATCGCTGAAAAGTTGCAAGGAGAATTCCAAGTCACAAATGGTTATGGACCCATAAAAGCAAAACAAGTTATGAAGGAACATTGGAGCACTTTTATTGTGGAAAAAGATTTCAAATTCATAGCAAGTAATGGATTAAATGCTGTCAGAATTCCGGTTGGTTGGTGGATAGCAAGTGATCCAACTCCACCTTCTCCTTATGTTGGGGGTTCCTTGAACGCACTAGACAATGCCTTTATGTGGGCAAAAAAATATGGATTGAAAATCATCATTGATCTTCATGCTGCACTTGGTTCTCAAAATGGCTATGAGCACAGTTCTTCAAGAGATGGTTCTCAGGAATGGGGAGTAACAGATGAAACCATCCAACAGACAGTTCGAATTATAGGCTTCTTAACTTCCAGGTATGCAAAAAGCCCTTGTCTTTATGCAGTTGAACTCTTAAATGAGCCTCGCTCACCTGGTGCAACACTAGAAAGTTTAAATAAGTACTACAAGGCTGGTTATCAAGCAGTGCGCAAGCACTCCTCCTCAGCTTATGTGGTGTTATCAAATAGGCTAAGTTCGCCAAACCCTAAAGAATTCTTCCCTGTTGCCAATGGCCTCAGGCGATCAGTGATTGATGTCCACTACTACAGTGTTTTCGACGATTTATTTACCGACATGACTGTCCAACAAAACATTGATTACATATACACCAACCGTTCATCTGATTTGAATTTTGTTACAACTGCAAATGGTCCTCTGGTATTTGTCGGTGAATGGGTTGCTGAGTGGAAAATTAAGAATGCTACAAAAGAAGATTTCCAAAGATTCTCCAAGGCCCAGTTAGATGTTTTTGGGCGAGCAACGTTTGGATGGGCCTACTGGGCTTTTAAAAATTCTGACAACTACAAGCATTGGAGTCTGGAGTGGATGATCAATAATGGTTACATCAAGCTTTAA 1527 0.406 MTRCINLKTCLFNLIIFTIFVITYGGRLNQNPEFKVKAVNLGGWLVTEGWMKPSLFDGIPNKDFLDGTGLQFKSVTTGKYLCAESGGGTILVANRSSASGWETFSLWRINENTFRFRVFNKQFVGLDGINVVAVTNTSTDSATFHVIKESGNSSLVRIKASNGYFLQAKTEVLVTADVSEVRGWGEDDPTVFDMNIAEKLQGEFQVTNGYGPIKAKQVMKEHWSTFIVEKDFKFIASNGLNAVRIPVGWWIASDPTPPSPYVGGSLNALDNAFMWAKKYGLKIIIDLHAALGSQNGYEHSSSRDGSQEWGVTDETIQQTVRIIGFLTSRYAKSPCLYAVELLNEPRSPGATLESLNKYYKAGYQAVRKHSSSAYVVLSNRLSSPNPKEFFPVANGLRRSVIDVHYYSVFDDLFTDMTVQQNIDYIYTNRSSDLNFVTTANGPLVFVGEWVAEWKIKNATKEDFQRFSKAQLDVFGRATFGWAYWAFKNSDNYKHWSLEWMINNGYIKL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5935 508 Gene3D - 47 186 - -
Lja1g5935 508 SUPERFAMILY Actin-crosslinking proteins 70 184 IPR008999 -
Lja1g5935 508 Pfam Cellulase (glycosyl hydrolase family 5) 219 489 IPR001547 GO:0004553|GO:0071704
Lja1g5935 508 PANTHER PUTATIVE-RELATED 17 508 - -
Lja1g5935 508 Gene3D Glycosidases 188 508 - -
Lja1g5935 508 PANTHER FASCIN 17 508 IPR010431 GO:0007015|GO:0051015
Lja1g5935 508 SUPERFAMILY (Trans)glycosidases 34 506 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5935 Lja-Chr1 108706227 108710539 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5935 - - gmx:100790619 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5935 1 108706227 108710539 Lja1g5935 1 108706227 108710539 ECH