Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5926 ATGGCGGTTGGTCTTCTTCTGTGGCTGTTACTGGCTAAAGGTCTTGCCATGGAGGGTGAAGCTGCGGTCACATTTTCTTCCAGGCTTGTTCATCGTTTCTCTGAGGAGGCTAAGGTTCATTTGGCTTCAAGGGGCAATGGTGCTGCGCTTCAATCATGGCCTAACAAAAGCACCTCTGAGTATTTCAGGTTGCTTCTGAACAGTGACCTTACACGCCAGAGGATGAAGCTTGGTTCGCAATATGAATCTATGTATCCTTCTAAGGGAGGCCAAACCTTCTTCTTTGGCAATGAGTGGAATTGGTTGCATTACACATGGATTGATATAGGGACTCCAAATGTTTCATTTCTTGTTGCATTGGACACTGGGAGTGATCTGCTTTGGCTCCCTTGTGACTGCATAGAATGTGCTCCCTTGTCAGCTGGTCACTATGATGTGTTGGATAGGGATCTGAATCAGTATAGCCCATCATTGTCGAGTACCAGCAGACATCTACCTTGCAGTCACCAGCTGTGTACTCGAGGTTACGATTGCAAAGGTTCTAAAGATCCTTGCCCTTATAATTATCAGTATAACACAGACAATACCTCAAGTTCTGGATTTCTTATTGAAGACAAACTACATTTGACATCCAATAGCAGACACACAGCAGAAAAATCTGTGCCAGCTTCTATAATTTTAGGTTGTGGCAGGAAACAAAGTGGTGGCTATTTAGATGGAGCTGCTCCTGATGGTGTTTTGGGGCTTGGACCTGGAAGCATTTCAGTCCCGAGTTTGCTGGCAGAGGAAGGACTTATTCGGAATTCTTTCTCAATTTGTCTTAATGATGATGAGTCTGGGAGAATTCTCTTTGGTGATCAAGGGCATGTCACCCAACAATCTACTCAATTCTTGCCTGTAGATGGAGAATTTATTGACTATATTGTTGGAGTAGAGAGGTTCTGTGTTGGGAGTTTCTGTCTCAAGGGAACTGGATTTCAAGCACTTATTGACAGTGGAGCTTCTTTCACATATCTTCCCCATGACATTTATAAAAAAGTTGTAATGGAGTTTGACAAACAAGTAAATGCAACCAGGGAAACTTTCCAACAATTACCATGGGAATACTGCTACGATGCCAGTTCACAGGAGGTGGTTAACACTCCACCGATTAAACTGACTTTCTCTAAGAATCAAACTATTTTAATTCGCAACCCATTGTCTACTTTTTCAATCAATGAGGAATATACTGCCATGTGTTTGACTGTGTACAATTCTAAGGATGACTATGTTACCATTGGACAAAACTACTTGAGGGGTTATCGCCTGGTCTTCGACAGGGAGAATCTACGGTTTGGCTGGTCTAGATCCAATTGTGAAGATAGTGTAGGAGTTAGAGTAAATTCCACATCACCGTCGCCGAGCACTTTACCAGCGAATCAGCAGCAGAGCCCTCCTAATACTCATTCTGTGCCACCGGCTATTGCTGGACACACTTCCCCCAAACCGTCCACGGCTACACCTGGTTTTACCTCTTGGCATTTGTTAAATTCATTGTCTCTGATATGCCTCCTTTTGTACTGGTTATGTGGTTAA 1575 0.4343 MAVGLLLWLLLAKGLAMEGEAAVTFSSRLVHRFSEEAKVHLASRGNGAALQSWPNKSTSEYFRLLLNSDLTRQRMKLGSQYESMYPSKGGQTFFFGNEWNWLHYTWIDIGTPNVSFLVALDTGSDLLWLPCDCIECAPLSAGHYDVLDRDLNQYSPSLSSTSRHLPCSHQLCTRGYDCKGSKDPCPYNYQYNTDNTSSSGFLIEDKLHLTSNSRHTAEKSVPASIILGCGRKQSGGYLDGAAPDGVLGLGPGSISVPSLLAEEGLIRNSFSICLNDDESGRILFGDQGHVTQQSTQFLPVDGEFIDYIVGVERFCVGSFCLKGTGFQALIDSGASFTYLPHDIYKKVVMEFDKQVNATRETFQQLPWEYCYDASSQEVVNTPPIKLTFSKNQTILIRNPLSTFSINEEYTAMCLTVYNSKDDYVTIGQNYLRGYRLVFDRENLRFGWSRSNCEDSVGVRVNSTSPSPSTLPANQQQSPPNTHSVPPAIAGHTSPKPSTATPGFTSWHLLNSLSLICLLLYWLCG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5926 524 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 328 339 IPR001969 GO:0004190|GO:0006508
Lja1g5926 524 SUPERFAMILY Acid proteases 99 454 IPR021109 -
Lja1g5926 524 Pfam Xylanase inhibitor N-terminal 104 286 IPR032861 -
Lja1g5926 524 MobiDBLite consensus disorder prediction 455 496 - -
Lja1g5926 524 Gene3D Acid Proteases 95 286 IPR021109 -
Lja1g5926 524 Gene3D Acid Proteases 288 457 IPR021109 -
Lja1g5926 524 Pfam Xylanase inhibitor C-terminal 327 448 IPR032799 -
Lja1g5926 524 ProSiteProfiles Peptidase family A1 domain profile. 103 448 IPR033121 -
Lja1g5926 524 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 474 - -
Lja1g5926 524 CDD pepsin_like 107 449 IPR034164 -
Lja1g5926 524 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Lja1g5926 524 PRINTS Pepsin (A1) aspartic protease family signature 424 439 IPR001461 GO:0004190|GO:0006508
Lja1g5926 524 PRINTS Pepsin (A1) aspartic protease family signature 109 129 IPR001461 GO:0004190|GO:0006508
Lja1g5926 524 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 118 129 IPR001969 GO:0004190|GO:0006508
Lja1g5926 524 PANTHER ASPARTYL PROTEASES 7 474 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5926 Lja-Chr1 108434255 108439780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5926 103 453 Miscellaneous Gene Families AT1G77480 27.005 2.82e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5926 - - lja:Lj0g3v0295819.1 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5926 1 108434255 108439780 Lja1g5926 1 108434255 108439780 ECH