Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5922 ATGCCTTATCAACTATCATCCTGTATTTGCATATCCAGTGCAATTTCGGTTCCAACAATTGCAAGTCACAGCAGTTACAAGTCAGCTGAAAGAGCTCAGAGATCAGTTGATCATGTCACCAAAATTCCCAGGAGTGTCAACATGGAGAGTCTGCAGAGTGGATATTTGTTTCCTGAGATATTCAAGAGAGAGACTGAATATGCAATGAGGAACCCACATACAAGGTTGTTAAGACTTGGTATTGGTGACACTACAGAGCCAATACCAAACATCATAGCTTCTGCTATGGCTGAGCAAGCATTGGCTCTTTCAACGGTGCAGGGCTATAGAGGTTATGGACTTGAGCAAGGCAATAGGGATCTAAGGATGGCAATAGCAGAAACATTTTACCAAGATATGCAAGTGCAAGAAAATGAGATTTTTGTATCTGATGGTGCACAATGTGATATTTCACGCGTTCAGATGCTTCTGGGACCTAGTTTATCAGTAGCTGTTCAGGATCCAACTTTTCCGGCATACCTAGATTCCAATGTCATTCTTGGTAGGGCTGGCAAGTTCCAAGTAGAAACTGAAAAGTACAAAAAAATTGTGTACATGAAGTGTGGACCTGAGAATAATTTCTTTCCAGACTTGTCAACTACTCCAAGGGTTGATGTGATTTTCTTTTGTTCTCCAAACAATCCAACTGGTAGTGCAGCATCTAGGCAGCAACTAAAGCAGCTTGTGGAGTTTGCAAAAGCAAATGGATCTATGATTATATATGACTCTGCTTACTCTGCTTACATATCAGATGAAAGCCCAAGATCAATCTATGAAATTCCTGGAGCCAGAGAGGTAGCAATTGAAATTTCATCGTTTTCCAAATTTGCTGGTTTTACTGGTGTCCGCCTTGGCTGGACGGTTGTCCCTGAAGAACTGCGGTATGCTAATGGTTATTCTGTACTAAAGGATTATGACCGCATTGTGTGCACCTCCTTCAATGGTGCATCAAATATTGTTCAAGCTGGTGGACTTGCTTGCCTTTCTCCTGAAGGATTTAAGGCACTAAAATCTACCATCAACCACTACATGGAAAATGCCAAAATATTGGTTGACACGTTTGAGTCACTTGGTCTGAAGGTGTATGGTGGCAGAAATGCCCCCTATATATGGGTGCATTTTCCAGGTTTGAGTTCATGGGATGTGTTCAATGAATTTCTTGAGAGAGCAGCCATAGTCATTATCCCGGGTACAGGATTTGGTCCTGGAGGAAAGGAGTATGTTAGAGTAAGTGCATTTGGTCACAGGGAATGTATGTTGGAAGCTTCAAGGAGAATCAGAAAACTTCTTTGA 1332 0.4174 MPYQLSSCICISSAISVPTIASHSSYKSAERAQRSVDHVTKIPRSVNMESLQSGYLFPEIFKRETEYAMRNPHTRLLRLGIGDTTEPIPNIIASAMAEQALALSTVQGYRGYGLEQGNRDLRMAIAETFYQDMQVQENEIFVSDGAQCDISRVQMLLGPSLSVAVQDPTFPAYLDSNVILGRAGKFQVETEKYKKIVYMKCGPENNFFPDLSTTPRVDVIFFCSPNNPTGSAASRQQLKQLVEFAKANGSMIIYDSAYSAYISDESPRSIYEIPGAREVAIEISSFSKFAGFTGVRLGWTVVPEELRYANGYSVLKDYDRIVCTSFNGASNIVQAGGLACLSPEGFKALKSTINHYMENAKILVDTFESLGLKVYGGRNAPYIWVHFPGLSSWDVFNEFLERAAIVIIPGTGFGPGGKEYVRVSAFGHRECMLEASRRIRKLL* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5922 443 Pfam Aminotransferase class I and II 77 427 IPR004839 GO:0009058|GO:0030170
Lja1g5922 443 CDD AAT_like 77 441 - -
Lja1g5922 443 SUPERFAMILY PLP-dependent transferases 55 439 IPR015424 -
Lja1g5922 443 Hamap LL-diaminopimelate aminotransferase [dapL]. 43 442 IPR019942 GO:0008483
Lja1g5922 443 Gene3D Aspartate Aminotransferase, domain 1 56 439 IPR015422 GO:0003824
Lja1g5922 443 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 20 443 - -
Lja1g5922 443 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 45 441 IPR019942 GO:0008483
Lja1g5922 443 Gene3D - 86 343 IPR015421 GO:0003824
Lja1g5922 443 PANTHER AMINOTRANSFERASE 20 443 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5922 Lja-Chr1 108346870 108350448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5922 K10206 - twl:120000713 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5922 1 108346870 108350448 Lja1g5922 1 108346870 108350448 ECH