Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5905 ATGGCTCAAGTGGGTTCTCTCTCTGCTGAACTTGAGACACTGAATCATGTTTTGTCACTAATGGAAGCATTCAGAGCATTCGACGCGGACAACGACGGCCGCATCAGAGGCGGAGCTAGTCAGCAAGAAGTGAGGGCAATGATGCAACAAGGGGACAAGAACAAGGATGGGCTACTATGTGTTAACGAGTTCTTGGAGCTGAACACGAAGCATTTGGAGACTGGGAATCTTGCAAGTGTCCTCAGCGCAGCATTTGAAGCGTTGGATGAAGATGGGAACGAGATTCTGACAGGTGAAGAGCTGCATGAGGTGATAGAAAATTTGGGTCTTGGATTGTCACTAGAGAAGTGTCAAAATATTGTGGGTTCGCTTGATGTGGATGGAGATGGAGCTGTGAGCTTGGATGAATTCCGACTCATAGTTGAATCCCTCCTCTAA 438 0.4749 MAQVGSLSAELETLNHVLSLMEAFRAFDADNDGRIRGGASQQEVRAMMQQGDKNKDGLLCVNEFLELNTKHLETGNLASVLSAAFEALDEDGNEILTGEELHEVIENLGLGLSLEKCQNIVGSLDVDGDGAVSLDEFRLIVESLL* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5905 145 Pfam EF hand 22 35 IPR002048 GO:0005509
Lja1g5905 145 Pfam EF hand 45 67 IPR002048 GO:0005509
Lja1g5905 145 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Lja1g5905 145 Gene3D - 6 144 - -
Lja1g5905 145 SMART efh_1 19 42 IPR002048 GO:0005509
Lja1g5905 145 SMART efh_1 80 108 IPR002048 GO:0005509
Lja1g5905 145 SMART efh_1 116 144 IPR002048 GO:0005509
Lja1g5905 145 SMART efh_1 43 71 IPR002048 GO:0005509
Lja1g5905 145 SUPERFAMILY EF-hand 14 141 IPR011992 -
Lja1g5905 145 CDD EFh 81 137 IPR002048 GO:0005509
Lja1g5905 145 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lja1g5905 145 PANTHER CALCIUM-BINDING PROTEIN CML26-RELATED 39 140 - -
Lja1g5905 145 ProSiteProfiles EF-hand calcium-binding domain profile. 112 145 IPR002048 GO:0005509
Lja1g5905 145 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Lja1g5905 145 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Lja1g5905 145 Pfam EF-hand domain pair 80 139 IPR002048 GO:0005509
Lja1g5905 145 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 39 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5905 Lja-Chr1 107864493 107864964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5905 17 141 EF-hand Containing Proteins AT1G24620 32.847 4.34e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5905 - K02183 mtr:MTR_5g027000 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5905 1 107864493 107864964 Lja1g5905 1 107864493 107864964 ECH