Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5900 ATGCATCCTCTCTGCTGCGTCTCCGCCATCACCGACAACTCTTCTCCGGTCAAACCCTCACCGTCCGCCGGTCCCCTCGCCGGCCTCTCCATGCCTCCCTTCCCTTCCGCCGTGAGATCCGAATCGTTTCCCCGTCCCGCCGGCCACGGCCACGTCAGTCACAGCGTCACCAACGGCGGCGACTGCAGCCGCGCGAGTCAGCAGCAGCAACAGTTGCCATCGACGTCGACTTCAGTGGCGGTGGACGTTAGGATCAACGACCTCGTCGGGAACGGAATCTCGGGGATACTGCATAAGTGGGTGAACTACGGTAAAGGATGGCGGCCACGGTGGTTCGTGCTCCAAGATGGTGTTCTCTCTTACTACAAAATTCACGGACCCGATAAGATCGTCGTCAACCCGGAAACCGAGAAGGGATCCAAGGTCATCGGCGATGAATCCATGCGTATCATCTCTCGCAACCGCAAATCTCACCGTTCCCTTCAACGAAAGCCCTTTGGTGAAATCCATCTCAAGGTTTCGACTATCCGCGAGAGTAAATCAGATGACAAGCGCTTTTCCATTTTCACTGGGACGAAGAGACTGCACTTGAGGGCTGAGACTCGTGAGGATCGAGTGGCGTGGATGGAGGCCTTGCAGGCGGTGAAAGATATGTTCCCTCGTATGTCCAACAGTGAGTTGATGGCTCCAGTGGACAATGTGGGTATTTCAACTGAGAAACTGAGGAATCGGCTTCAGCAAGAAGGTTTAAATGAGGCAGCCATTCAGGATAGTGAGCAAATCATGAGAAATGAGTATGCAGCACTGCAAAACCAACTTCTGCTGCTCAAGCAGAAGCAGTTGATCCTAATTGACAATTTACGACAATTGGAGACAGAGAAGGTTGATCTGGAGAACACTGTTGTTGATGAGAGTCAAAGACAGTTCAATGATGAAGAGGCTTCCTCTATATTAAGGCAGGAAAAATTTAGTGAAGCAAGTGCAAGTGAGTCTGAGGATTATAATGATAGAAATGATGCGGCAGAGGAAGAAACGGACGATGAAGACACTGCCTTTTTTGACACTCGGGATTTTCTGTCGTCATCCAATTCTTTTAAAAGTAATGGATCTGAGTTAAGGGTTTCATCTTTCTCTTCAGATGATGAAGGGCTCTTAGCAGGTGAATCAGAAGATGATATCGACCCTTCTATTAGATCTGTTGGAACCAACTATCCTCTTGTTAAGCGGCGTAAGAAATTGCCTGACCCTGTTGAAAAAGAGAAAGGTGTCAGTCTTTGGTCTTTGATTAAAGATAATATTGGGAAAGATCTAACTAAAGTATGCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCTCTGCAAAAGTGTTGTGAAGAAATGGAGTATTCATATCTCCTGGACCGAGCATATGAATGGGGAAAAAAAGGTAATAGCCTCATGAGGATTCTCAATGTTGCTGCTTTTGCTGTATCTGCCTATGCTTCAACTGAAGGAAAAATTTGCAAACCGTTTAATCCATTACTAGGGGAGACATATGAAGCTGACTTTCCAGATAAAGGCTTTCGTTTTATCTCAGAAAAGGTCAGTCATCATCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGGGCGGATAGCAACTTAAAGAGCAAATTCTGGGGCCGATCAATTCAACTTGATCCTATTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATTCCAATGGAGTAAGGTTACTACATCAATATACAATCTCATATTGGGAAAGCTCTATTGCGATCACTATGGTACAATGCGTATACAGGGAAACCGAGAATACTCATGTAAACTGAAATTCAAAGAACAATCAATAATTGAACGAAATCCTCACCAGGTTCAGGGTATTGTTCAGGATAGAAATGGGAAAACATTGTCTACATTAATTGGAAAATGGGATGACAGCATGTACTATATTAATGGAGACCATGGTGGGAAGGGTAAAGGTTATGAATCATCATCAGAAGCCCATCTTCTATGGAAGCGGAGCAAGCCTCCCAAGTTTCCGACTAGATATAACTTCACTCGCTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAGGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCTGATCAAAGGTATTTGGAAAATGGGCAGTATGAGATGGCGAATTCAGAAAAATTACGACTAGAGCAGCGACAACGGCAGGCTCGGAAGATGCAAGAGAGCGGTTGGAAACCACAGTGGTTTGCTAGGGATAAAGAAACCGGTAGCTACCGCTTCTTAGGAGGGTATTGGGAGGCCCGAAAAGAAGGAAACTGGAACTCATGTCCTGACATTTTTGGCCAAATTCCTCCCGATCATCTTTCAGACGAAGGATAA 2409 0.4545 MHPLCCVSAITDNSSPVKPSPSAGPLAGLSMPPFPSAVRSESFPRPAGHGHVSHSVTNGGDCSRASQQQQQLPSTSTSVAVDVRINDLVGNGISGILHKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIVVNPETEKGSKVIGDESMRIISRNRKSHRSLQRKPFGEIHLKVSTIRESKSDDKRFSIFTGTKRLHLRAETREDRVAWMEALQAVKDMFPRMSNSELMAPVDNVGISTEKLRNRLQQEGLNEAAIQDSEQIMRNEYAALQNQLLLLKQKQLILIDNLRQLETEKVDLENTVVDESQRQFNDEEASSILRQEKFSEASASESEDYNDRNDAAEEETDDEDTAFFDTRDFLSSSNSFKSNGSELRVSSFSSDDEGLLAGESEDDIDPSIRSVGTNYPLVKRRKKLPDPVEKEKGVSLWSLIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGKKGNSLMRILNVAAFAVSAYASTEGKICKPFNPLLGETYEADFPDKGFRFISEKVSHHPMIVACHCEGTGWKFWADSNLKSKFWGRSIQLDPIGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNREYSCKLKFKEQSIIERNPHQVQGIVQDRNGKTLSTLIGKWDDSMYYINGDHGGKGKGYESSSEAHLLWKRSKPPKFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGQYEMANSEKLRLEQRQRQARKMQESGWKPQWFARDKETGSYRFLGGYWEARKEGNWNSCPDIFGQIPPDHLSDEG* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5900 802 MobiDBLite consensus disorder prediction 56 77 - -
Lja1g5900 802 Gene3D - 91 219 IPR011993 -
Lja1g5900 802 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 795 - -
Lja1g5900 802 Coils Coil 729 749 - -
Lja1g5900 802 Coils Coil 287 307 - -
Lja1g5900 802 MobiDBLite consensus disorder prediction 306 335 - -
Lja1g5900 802 Coils Coil 259 279 - -
Lja1g5900 802 Gene3D - 510 687 - -
Lja1g5900 802 Pfam Oxysterol-binding protein 424 779 IPR000648 GO:0008289
Lja1g5900 802 Gene3D - 721 782 - -
Lja1g5900 802 MobiDBLite consensus disorder prediction 336 351 - -
Lja1g5900 802 SUPERFAMILY Oxysterol-binding protein-like 419 797 IPR037239 -
Lja1g5900 802 MobiDBLite consensus disorder prediction 37 77 - -
Lja1g5900 802 CDD PH_ORP_plant 93 224 - -
Lja1g5900 802 SUPERFAMILY PH domain-like 93 223 - -
Lja1g5900 802 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 795 IPR000648 GO:0008289
Lja1g5900 802 SMART PH_update 91 219 IPR001849 -
Lja1g5900 802 ProSiteProfiles PH domain profile. 90 217 IPR001849 -
Lja1g5900 802 Pfam Pleckstrin homology domain 98 213 - -
Lja1g5900 802 MobiDBLite consensus disorder prediction 306 353 - -
Lja1g5900 802 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5900 Lja-Chr1 107745596 107752818 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5900 K20456 - gmx:100812036 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5900 1 107745596 107752818 Lja1g5900 1 107745596 107752818 ECH