Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5891 ATGGCGTTGCATCTTCAATTTCTTTTAACAATTTCTTTGGTTCTTGCCATAATCTTATCAGGGCAAAGAACCTGCGAGGGTGCCAGAGTTTTCACCATAGTAAACTACTGCAAGGAGACATTGTGGCCAGCGGTGATGCCAGGGGACAACTTCAACGGCGGAGGTTTCGTCCTAAAACCGGGGCAATCCGCCGTGTACACCGCTCCGGTCAGCTGGAGCGGTCGTATATGGGCACGAACCGGTTGCAACTTTGACAAAGATGGAAACGGTTCGTGCCAGACCGGTTCATGCGGCTCAACTCTAAAATGCTCCGGCGCCTCCGGAAAAACCCCAGCATCGCTAGCAGAGTTCACGCTAGCTCAGCCGGATTTCTACGATGTTAGCCTCGTTGATGGCTTCAATGTGCCGATTTCCATTAAGCCGATGAACGGGAAGGGGAACTGCAGCACCGCGGGGTGTGATTCTGACCTCAGGTTGACCTGTCCAAAAGAGCTTTCTGTTAAGGCTAACGGCAAGACGGTTGGGTGCCGAAGCGCGTGTGATGTGTTTGATCAGGATGAATATTGTTGCAGAGGGAATTATGGGAACCCATCTACTTGTCAACCCACGTTTTATTCCAAGAAGTTTAAGGAGGCTTGCCCAACTTCATATAGTTATGCTTATGATGATCCAACTAGTATTTTCACTTGCTCTGGGACTGACTATGTCATAGCCTTCTGTGCTTCCAGGAAAAAACAAGTATGCAGTTACCATGATAACAAGCTTCACTGCAGTCGGTCACAAGGCTTGAAGTCATTGATTGGAAGCTGGTGGATCATGATGATAACAATGTTTTCGGCGCTTATTAGTTTGTGGAGTGGAATCTTGGTACCCTGCTAA 879 0.4835 MALHLQFLLTISLVLAIILSGQRTCEGARVFTIVNYCKETLWPAVMPGDNFNGGGFVLKPGQSAVYTAPVSWSGRIWARTGCNFDKDGNGSCQTGSCGSTLKCSGASGKTPASLAEFTLAQPDFYDVSLVDGFNVPISIKPMNGKGNCSTAGCDSDLRLTCPKELSVKANGKTVGCRSACDVFDQDEYCCRGNYGNPSTCQPTFYSKKFKEACPTSYSYAYDDPTSIFTCSGTDYVIAFCASRKKQVCSYHDNKLHCSRSQGLKSLIGSWWIMMITMFSALISLWSGILVPC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5891 292 SMART tha2 31 241 IPR001938 -
Lja1g5891 292 CDD TLP-PA 30 240 - -
Lja1g5891 292 PIRSF PR5 1 282 IPR001938 -
Lja1g5891 292 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Lja1g5891 292 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Lja1g5891 292 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Lja1g5891 292 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Lja1g5891 292 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Lja1g5891 292 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Lja1g5891 292 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 255 - -
Lja1g5891 292 SUPERFAMILY Osmotin, thaumatin-like protein 30 241 IPR037176 -
Lja1g5891 292 Gene3D Thaumatin 30 240 IPR037176 -
Lja1g5891 292 Pfam Thaumatin family 35 240 IPR001938 -
Lja1g5891 292 ProSiteProfiles Thaumatin family profile. 28 240 IPR001938 -
Lja1g5891 292 PANTHER OS03G0233200 PROTEIN 10 255 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5891 Lja-Chr1 107540769 107545279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5891 2 284 Receptor kinase-like Gene Family AT5G38280 38.514 2.06e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5891 - - gmx:100813659 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5891 1 107540769 107545279 Lja1g5891 1 107540769 107545279 ECH