LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g5883	ATGAAAGCCGCAGTTGAAGGATCATCCATGGGTAAGAAGCGCCGATCCAATCGTCGAACCAAGCAAAACCCATCTTCATTCTCAGCATCTGAAGTAAAAGAGACTCCTGGGGGTTCTTCAGAATGTTTGGGAAAAAATGACACACCGGTTCCTTCGACTGCGTCCTTGAGCAATCCACTGAAGCAGCAGGGGACTAATGTTTATTCCACTAATGAGCAAGTTTTGCCGCAAGCATCGAATTTCGTGTTCGGTTCAGTGCCCCCCATGCTTATCAATGAGCATGTGCAACCTGTTTTGCAGAACATCCAAATGCCTGGTGGAGGAATTGATTCAATATCACTTTCTGATCCCATTGGTTGCAGAGGGTCATCAGGAAGGAATAGCAAAACCAAATACCCATTAGGAAAATATTTTAGTCCTCACTGGTCTCAAGAGGCAGTTGAGAAGGCATTAGAGAGGGGTGATGTTTTAAAAGCTCGCTTTCATGTCAATGTTCACAATACACTTGAGGCCTACTGCAAAATTGATGGAGTGCCAACAGATGTTCTCATTAATGGGTTTTTGGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCTGTTAAGATTGATCCTTTGCCATTGTGGACAAAAATGAAAGGACCTATTGTGAATGGCAACAATATGGCAACACTTGAAAGTTGTAATCTTGTAGAAGATGATGGAGCTGGCGTTAACAATTGTAAAGGAATAGGTAAGGTAGATGCTGATTATGAATCTGCCCATTCCCGAAGTCCTGGTAAAAACAAGGAGGATTCTGATGATCACAGCTCTACCCCAGACAAAAGTTCTCCATTTCCTGAAACAAGATGCATTTATGAGGATAATACCTCCCAGGGTTCAGCTAACCATATAAATCCACTTGGTCTTGCCAGCCATGATGGCAGTGATGGAACTCACTGTGCTGCTTCTTATTCCTTAGAGATGAATTCTTGTAATGGACAGGGTAAAGTTATTAATGCAGTGGAGAAGATGTGTTTGTTGGTTAAATCTTTTCCTTCTAAAAGACCAACTGGCAGGGTTGTTGCTATTGTTGAAAGGTCTCCACGTCGAGAGGGTATTGTTGGTCATCTTAATGATATATATTGCCTTTGTTGCAAAACATATTCAAGGGAGATTACGAAATTGTGTGAGCCTGAATACTTCCAGCTGACACCAATTGATCCAAAGTTTCCTTCTGTGATAATTCTTATGAGAGATTTACCAGAGTGCCTTAAGAAAAGGTGGGAATGTGCCGATATGACTATGGAAAGGGATCTTGTAGCTGTACAAATTGATGATTGGATTGAAGAACGTCCTTTTCCAGAGGGTCACGTCTTGCATATTTTTGGGCGAGGTGGTGAAGTTCAGCCCCAATTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTATCTGAATTTTCTCCTGAAGCTCTATCCTGCCTGCCATGTGTTCCTTGGGAGTTGCCTCCAAAGGAAATCAAAAGTAGAAAAGATCTTAGAAATTTGTGTGTATTTACTATTGATCCTTCAACTGCTACTGATCTGGATGATGCACTATCAATTGAGAAGTTACCTAGTGGAAATTATAGAGTAGGTGTTCACATTGCCGATGTATCATACTTTGTTCTACCGCACACGGCTTTAGATAGGGAGGCTCAGAGTAGGTCAACAAGTGTTTATATGTCTCAAAGAAAGTTACCTATGTTGCCAGCATTATTTTCAGAGAATATTGGTTCACTTAATCCTGGAGTGGATCGACTTACAGTTTCCATTCTCCTGGATATTACTGATGCTGGGGATGTTGTAGACCGCTGGGTAGGCCGTGCTGTTATTCAATCTTGTTGTAAACTCTCGTATGAACATGCTCAGTTCATCATTGATTGTCAAATTTCTGACTTCTATGGAGAAGACTTTCCTAAAGTGCATGGCCGTTTTGAATGGCCTGATGTTATTTCATCTTTGAAGAGTCTTTATGCAATTTCAGATGTCTTGAAACACAAGAGGTTTACTGATGGGGCTCTGCGACTTGATAACCCAAAAGTTGCAATCCTGTTTGATGAAAATGGAATACCTTGTGATATTACGTTTTCTGAACGGAAAGAGTCAAATTTACTCGTGGAGGAATATATGCTTTTAGCCAATAGAACAGCAGCTGAAGTCATATGTAGAGCTTATCCCGACATTGCATTATTGCGTAGACATCCTGAGCCTAATATGCGGAAACTGAGAGAGTTAATGGCATTTTGTGAGAAGCATGGTTTAGAATTGAACACATCTTCATCTGGTCAGTTCCACCGGTCATTAGAGAAGGCAAAGGAAAAGCTCAAGGACGACCCTGTTCTTTATGATATACTTATTTCATATGCTACAAAGCCAATGTTGTTGGCATCCTACTTCTGTAGTGGAGATTTAAAGGACAATGAACATGAATGGGGTCATTATGCATTGGCTGTTCCTCTTTACACCCATTTCACATCACCTCTGCGGCGGTATCCGGATATTATTGTTCATCGGACACTACTTGCTGCTATAGAGGTTGAGGAATTATATATGAAGCATCAGAAGGTTATGAAGGTTAACAAGGAAGTGAGAATGCAAAAGAAATGTTTCACAGGTATCAACTTTGAAAAAAATGCAGCAGAATCCATGGAAGGTAGGGAAGCACTAGCAGCTGCATCTATGAAGCATGGAGTTCCGTGTTCAGAAGTACTTGCAGATATTGCTGCTTATTGCAATGAGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCATGTGACAAACTTTACATATGGTTTCTCCTAAAGAACAAAGGGGCCTTAATCTCAGAAGCAAGAGTAATGGGACTAGGCCCAAGGTTCATGTCAATTTATATCCAAAAACTAGCTATTGAGCGACGCATAAATTACGCTGAAGTTGAAGGTTTGAAAGTGGAGTGGCTAGAAGCAACATCCACTTTGGTGCTTAGCATGAATCCTAAGCACGCATTTAGGAAGGGTAGCCCGAACATGTTGAGGGCATTTGAAGAAGTTGCATTGGTCACTTCTCCATATCTAAGTGATGACAGTGTATCTTCCATATCCAGATCAGACACCTCAGAGAGTGAAATTGAGCCTGCTGTTTTTCCACTCACAGTGCGTGTTCTTTCAACAATTCCGGTGGTTCTTCTTCCTGTTGGTGGAGATTATGGGCCCGTTGATATTAGAGTGAGGCTGTACATGAGCTCCTATTTTGGGTTTTGA	3261	0.4128	MKAAVEGSSMGKKRRSNRRTKQNPSSFSASEVKETPGGSSECLGKNDTPVPSTASLSNPLKQQGTNVYSTNEQVLPQASNFVFGSVPPMLINEHVQPVLQNIQMPGGGIDSISLSDPIGCRGSSGRNSKTKYPLGKYFSPHWSQEAVEKALERGDVLKARFHVNVHNTLEAYCKIDGVPTDVLINGFLAQNRAVEGDIVAVKIDPLPLWTKMKGPIVNGNNMATLESCNLVEDDGAGVNNCKGIGKVDADYESAHSRSPGKNKEDSDDHSSTPDKSSPFPETRCIYEDNTSQGSANHINPLGLASHDGSDGTHCAASYSLEMNSCNGQGKVINAVEKMCLLVKSFPSKRPTGRVVAIVERSPRREGIVGHLNDIYCLCCKTYSREITKLCEPEYFQLTPIDPKFPSVIILMRDLPECLKKRWECADMTMERDLVAVQIDDWIEERPFPEGHVLHIFGRGGEVQPQLDAILFQNAICLSEFSPEALSCLPCVPWELPPKEIKSRKDLRNLCVFTIDPSTATDLDDALSIEKLPSGNYRVGVHIADVSYFVLPHTALDREAQSRSTSVYMSQRKLPMLPALFSENIGSLNPGVDRLTVSILLDITDAGDVVDRWVGRAVIQSCCKLSYEHAQFIIDCQISDFYGEDFPKVHGRFEWPDVISSLKSLYAISDVLKHKRFTDGALRLDNPKVAILFDENGIPCDITFSERKESNLLVEEYMLLANRTAAEVICRAYPDIALLRRHPEPNMRKLRELMAFCEKHGLELNTSSSGQFHRSLEKAKEKLKDDPVLYDILISYATKPMLLASYFCSGDLKDNEHEWGHYALAVPLYTHFTSPLRRYPDIIVHRTLLAAIEVEELYMKHQKVMKVNKEVRMQKKCFTGINFEKNAAESMEGREALAAASMKHGVPCSEVLADIAAYCNERKLASRNVKDACDKLYIWFLLKNKGALISEARVMGLGPRFMSIYIQKLAIERRINYAEVEGLKVEWLEATSTLVLSMNPKHAFRKGSPNMLRAFEEVALVTSPYLSDDSVSSISRSDTSESEIEPAVFPLTVRVLSTIPVVLLPVGGDYGPVDIRVRLYMSSYFGF*	1087

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g5883	1086	SUPERFAMILY	Nucleic acid-binding proteins	136	360	IPR012340	-
	Lja1g5883	1086	Pfam	RNB domain	503	851	IPR001900	GO:0003723\|GO:0004540
	Lja1g5883	1086	SMART	RNB_2	503	853	IPR001900	GO:0003723\|GO:0004540
	Lja1g5883	1086	Gene3D	-	127	231	-	-
	Lja1g5883	1086	MobiDBLite	consensus disorder prediction	21	63	-	-
	Lja1g5883	1086	Gene3D	-	380	461	-	-
	Lja1g5883	1086	Hamap	DIS3-like exonuclease 2 [DIS3L2].	12	1060	IPR028591	GO:0000175\|GO:0034427
	Lja1g5883	1086	PANTHER	RIBONUCLEASE	18	1083	-	-
	Lja1g5883	1086	PANTHER	DIS3-LIKE EXONUCLEASE 2	18	1083	-	-
	Lja1g5883	1086	MobiDBLite	consensus disorder prediction	252	274	-	-
	Lja1g5883	1086	MobiDBLite	consensus disorder prediction	252	286	-	-
	Lja1g5883	1086	MobiDBLite	consensus disorder prediction	1	63	-	-
	Lja1g5883	1086	SUPERFAMILY	Nucleic acid-binding proteins	465	943	IPR012340	-
	Lja1g5883	1086	Pfam	Dis3-like cold-shock domain 2 (CSD2)	394	473	IPR041505	-
	Lja1g5883	1086	ProSitePatterns	Ribonuclease II family signature.	820	844	IPR022966	-
	Lja1g5883	1086	SUPERFAMILY	Nucleic acid-binding proteins	351	475	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g5883	Lja-Chr1	106885031	106892104	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g5883	K18758		-	gmx:100815252	1501.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g5883	1	106885031	106892104	Lja1g5883	1	106885031	106892104	ECH