Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5858 ATGAATGATCCGGTCGAGCTCGCCACACCTAAGCGCCGAGGAAGAGGCAAAGAAGATCAAGGATCACCGGCCGGCGAGAGCAGCAACACAAAATTGAAGTCTCCCGGAAAAGTCACTCCTAGAAAGCGAAGTTCCAAGAATAGCACCCCAAAGAAAAATTTGAAATTTAATGGAATTAAGGAGGCGGCGTCACCTGATTCGGCTCGGAAGATTGATTTGCGGTTGGAGGCGAAGTTATCAGCTGAGGAAAATTCAAGGTTGTTTGCTGGACGGCAAATACATCCATTCTTTTCGTCTTGGAAGACGGGAAAGAAGTCTCAGGAGCCGGCTGATTCAGAACATGGTTTATCTGAAGCTAAGAGGGAGGGTGGAAGAACTACCTGTGATCCTACTCTTGTCCATGTATTTGAAGATGTTCAGGAAGATACTTCATCTCTGGACTGGAGTGACTGGACATTTTTGGGGGATACCACTGTTGTGGAAGAAAGTTTAAATTTACCAGTTTTGGTGGGTTCTGTTGAATCCTTAAATTTTGATAACTTTCTTAGTGCTTCAAAACCCTCACATGCTTCAATTTCTGGAAATGCCTGGTCTTGTTCCAATCAACTTTCTATACAACCAGATAATATGCTGGAAATATCTCCGGGAAACGCAGCTGTGCTAGCTAGTGAGCAAACAATATGCCCTTCAAAGCTAGAAGAGGCCAACATGGACTTGGAGGGGGATGAAGTCTGTACTGTATCTGGGCAAGCAGGCATTTTCAGAAATTCAGATGCTGAGCCTCTGAGTAGATTTCTTCAAGAAAGTATGGCATCTTACTACCGCAGTTGTCAAAACAAGGCTGAGGGCAGCTTATGGATAAACAAGTACAAGCCAACAAAGGCTACTGAGGTGTGCGGAAACTCTGAATCTCTAAATTTCTTGCGTGACTGGTTACATCTTTGGCGTGGAGGACGTTATCATAGCAGAAAGGATTCCTCCACCTGGGATCAAAGTTACATACAAGATGAAGACGATGATTTTAACTATTCTGATAGTGACTATGCTTTGAAAGATATCAATGAGGAGGATTCCCTGGAAAACGTTCTTTTGATTACGGGACCAGTTGGGAGTGGCAAGTCTGCAGCTGTCTATGCTTGCGCCGAAGAGCAAGGCTTCGAGGTTTTAGAGCTCAATGCATCAGACTATCGAAATGGGGCTGCAGTCAAGCAATATTTTGGTGAGGCTCTTGAAACACATGGTTTCAAAAGGTTACTGGAACAGGCTGTGAGTTCACAAAATAAAACTGTGAAATTTCCCCCTGCTCCAACTTCACCTAATGGTAAAGCAGCCGAGGAGATATATGATGGAGTGATAGATCTGACAACCTCATCCAATGATGGAGTTCATAGTCCTGGTGGAAAGTCTCAGAGGTTACATGAGAAGAATAATGTATTTACATGTCATAGTGTCCAAACTTTAATTCTTGTTGAGGATGTGGACATCCTTTTTCCTGAAGATCATGGATGTATTGCTGCCATAAAGCACATTGCTGAGACAGCAAAAGGGCCTATTATATTGACCAGCAACAGTAACAATGTTGCCCTGCCTGGTAGTTTTATTAGGCTCCATGTTTCTTTCTCATTGCCATTGCCAGATGAGTTGCTTTGCCATTTGTACATGGTGTGTGTCACAGAAGAAGTCAACATCAGTCCTCATTTACTGAAGAAGTTTATCCAGTCATGTGATGGAGATATTCGTAAAACCATTATGCATCTTCAGTTTTGGTTCCAGAATAAAAAATATAGAAAATACAGGAAAGTGAAGACAGTATATAGCTCACTTCCATTTGATCTTGAAGCTGGTCATGAGTTATTACCAAAGATATTACCCTGGAGCTTTCCCTCAGAGTTACCCAAACTAATTGAGAAGGAAGTTTCCAAGTCAGTAACCTTAATGGAAGAAAACCCATGCTTGCAGGGGTTAGTTGAGGAAGAGCTTCAGATTAATAAAAAGCATAATGATTTAGGTGTGCAGTGTATAGTAACTGATGAGGCCAATGTAGAAATGAAGAGGAAGAGATCTATCGCAGACTGCAATGAGTTTGAAAGTCAATGTAGTGCTATGTCTGAGCTTTCTAATTGTTATGGATCCCCATTAACACCCTCTAGGCAAATGGGCCCAAAGAAACTTGCTGTGATGTCCTCTGAGTCTGAGGATAAGTATCCAAATTATGGACATTCTCTAAATATTCACCATGAAGATTACAAGAGACAATCCCTTGAAGGCAATAGTGAATCTTCCTGTAAGTTTGAATTGAATCAAAGCTACACTAGTATGTCATTTTGCAAGCTGGTTTGTTCTGGTTTGGAGAATTCAGAGGAACAGAGTAATTATTTAGAAACATCTTATGGTGCATGGTTGGATGAAACACATAAATCATTAAATATATCCAGTTTTCAAGAATCGATGATTATTCCTGAGACTGCAACTGAGAATAGAACACAGACATTATCTGCAGCAGTGTCTTCTGGCCAGGATGAAACACATAAATCATTAAATATATCCAGTTTTCAAGAATCGATGATTATTCCTGAGACTGCAACTGAGAATAGAACACAGACATTATCTGCAGCAGTGTCTTCTGGCCATCTTGCTGGTCCAATAGAAGTTTCTCCGGATAATGCGCTGACACCATTCACTTTCAGTGTTTGTCAGCGCATAGCCAGATTGCCACAGAATTTGGATTCATTGGTAAACACTGAAATTCCAGAATCTTCTCCAAAAGTGTCGGTGCAAGACTTTAGAGATGAGAACAGGGAAACCACAACTGTGTATAACATGATGGGTGAGTGCAGTCATGAAGAATTTAACTTGAAGTTGAATTTTGTCGAGTCTAGTCCATCTATGGAGATAGATATGATACAAAATTTATGGAGAAGACTTCTTGATTGTAAAACGGATTTAAGACAGAATGCCACCTCAGAACAGGAAGGTGCTATCCAAGTTGTTAAACTTGCTAGTGAGCTAACCAATCTAATTTCAGAAGTTGACGTGTTGTTTCGTAATCACCAGCAGGAACAATGTGGTATTATGGAGCCTCCAATATTCCTTTCTGATGAAGCCACATATAGTTGGTATGATGAGCAAATGATGATGTCCACGGTTGCGATGCATGGTTTTTGTTTCTATGCGAAACATATATCAGATATGGGATCAAAGTTGGGTTGTGAAAACAGGGTAGATGTAACCTCAGAGATGTTGGCTTCCACTACTAATATTATGGCTCTGGGGAAGTTATCTAGACAGGATCACACTAAAAGCCTGAGTAACAATACTACAAAGGAATTAGATGATATGAAGAGCATGCAATACAACGAAAACAGAAAATCCTTGTTCAATGTGATCCAGTCCATTGTTCCTGCAAGATTATCATTGGCAATGAAAGGTATTGCATTCAATGAATATCTCTCTTCACTACGCCAAATTTCAGTTTCAGAAGATATCCGCATGTCACAAGGTGCTAAAAAGATGAGAAAAGGAAGGCCGCGGGGTGCTCATTATTTGAGCAGAGGTAAAATGTTCTCTCCTGAAGATATATCATTGGTGTGTGAGGGAGACTTGTACAGAAAGATTTCTTCACAGTACACCGCTAACATGGAAAGCAACTGTGCATGA 3657 0.4085 MNDPVELATPKRRGRGKEDQGSPAGESSNTKLKSPGKVTPRKRSSKNSTPKKNLKFNGIKEAASPDSARKIDLRLEAKLSAEENSRLFAGRQIHPFFSSWKTGKKSQEPADSEHGLSEAKREGGRTTCDPTLVHVFEDVQEDTSSLDWSDWTFLGDTTVVEESLNLPVLVGSVESLNFDNFLSASKPSHASISGNAWSCSNQLSIQPDNMLEISPGNAAVLASEQTICPSKLEEANMDLEGDEVCTVSGQAGIFRNSDAEPLSRFLQESMASYYRSCQNKAEGSLWINKYKPTKATEVCGNSESLNFLRDWLHLWRGGRYHSRKDSSTWDQSYIQDEDDDFNYSDSDYALKDINEEDSLENVLLITGPVGSGKSAAVYACAEEQGFEVLELNASDYRNGAAVKQYFGEALETHGFKRLLEQAVSSQNKTVKFPPAPTSPNGKAAEEIYDGVIDLTTSSNDGVHSPGGKSQRLHEKNNVFTCHSVQTLILVEDVDILFPEDHGCIAAIKHIAETAKGPIILTSNSNNVALPGSFIRLHVSFSLPLPDELLCHLYMVCVTEEVNISPHLLKKFIQSCDGDIRKTIMHLQFWFQNKKYRKYRKVKTVYSSLPFDLEAGHELLPKILPWSFPSELPKLIEKEVSKSVTLMEENPCLQGLVEEELQINKKHNDLGVQCIVTDEANVEMKRKRSIADCNEFESQCSAMSELSNCYGSPLTPSRQMGPKKLAVMSSESEDKYPNYGHSLNIHHEDYKRQSLEGNSESSCKFELNQSYTSMSFCKLVCSGLENSEEQSNYLETSYGAWLDETHKSLNISSFQESMIIPETATENRTQTLSAAVSSGQDETHKSLNISSFQESMIIPETATENRTQTLSAAVSSGHLAGPIEVSPDNALTPFTFSVCQRIARLPQNLDSLVNTEIPESSPKVSVQDFRDENRETTTVYNMMGECSHEEFNLKLNFVESSPSMEIDMIQNLWRRLLDCKTDLRQNATSEQEGAIQVVKLASELTNLISEVDVLFRNHQQEQCGIMEPPIFLSDEATYSWYDEQMMMSTVAMHGFCFYAKHISDMGSKLGCENRVDVTSEMLASTTNIMALGKLSRQDHTKSLSNNTTKELDDMKSMQYNENRKSLFNVIQSIVPARLSLAMKGIAFNEYLSSLRQISVSEDIRMSQGAKKMRKGRPRGAHYLSRGKMFSPEDISLVCEGDLYRKISSQYTANMESNCA* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5858 1218 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 840 1214 IPR004582 GO:0006281
Lja1g5858 1218 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g5858 1218 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 1 838 IPR004582 GO:0006281
Lja1g5858 1218 CDD AAA 349 430 - -
Lja1g5858 1218 MobiDBLite consensus disorder prediction 106 125 - -
Lja1g5858 1218 Gene3D - 543 608 - -
Lja1g5858 1218 MobiDBLite consensus disorder prediction 99 125 - -
Lja1g5858 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 605 IPR027417 -
Lja1g5858 1218 MobiDBLite consensus disorder prediction 1 66 - -
Lja1g5858 1218 Gene3D - 283 538 IPR027417 -
Lja1g5858 1218 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 1 838 - -
Lja1g5858 1218 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 840 1214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5858 Lja-Chr1 105156961 105172117 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5858 - - gmx:100815984 1362.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5858 1 105156961 105172117 Lja1g5858 1 105156961 105172117 ECH