Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5855 ATGGATGAACCCTCGCTGCAACTCGTCTCCGAAATCGGAACTCACATCGCTCAACGAACTCGTCCTAACAAAGACTTCATCGTCAAATCTCTCCGAAAAGCTGTAAATGCTTTGTCTCAGTTAGAGCAGTGTCCTCAGCCACGATCCGCCGAAAAAGTAGCAGCTGCATTGAAGCCCCTGGCAAATGCATTGGTTGGTGGTGGTCTGCTTCAACATGCGGATAAGGATGTTAGGCTTCTCGTTGCTATTTGTGTCGCTGAACTTTTTAGAGTCAATGCACCTGAACCGCCGTTTAAAGCGGAGCATTTAAAGGATGTATTTAAACTTATCATCAGTTTGTTTGCGGATCTAGCTGACACTGCAAGTCCGTTCTTTTCGAAAAGGGTTAAAGTATTGGACACTGTGGCTCAATTAAGGTGTTGTGTATTAATGCTGGAGATTAACTGCGTAGGCCTGGTTCTTGAGATGTTCAATGTTTTCTTCTCAGTTGTGAGAGACGACCACCATGATAGTTTGATTAGTGCCATGTCTTCTATAATGATAAACATATTGAATGAGAGTGAGGAGGCTTCTCAGCAACTATTGGAAGTGATTTTGCGAAATCTTATAAAGCGAAAAAAAGATGCAACTTGTGCTGCTTATCAACTTGCTGCATCAGTCATCAAAGCCTGCACACAAGAAGACGAGCTGAATCTCCTAGTTTGTAGCTTTTTGACCTCTTGCATACATGACAGAGACACTGTGGGCTGTGAGCTTAAAGAATTTTACCATGAAATTATCTTTCAAGTTTTCCAATGTGCGCCTCAGATGCTTCTTCCTGTTATCCCAAGCTTAATTGAAGAATTATTGGCTGATCAGGTTGATATTAGGATTAAAGCTGTTAATTTGGTGGGGAAGCTTTTCGCACTTCCAGAACACCATGTTGCACACAAGTATCATGATCTTTTTGTGGAGTTCTTAAAAAGATTTTCTGATAAATCTGTGGATGTGAGAATTAGTGCTCTACAATGTGCCAAAGCTTTCTACATGGCGAATCCCTTTGGGAGAGAATCACATGAAATTATCACTTCAGTTGAAGATCGATTATTAGATTTTGATGACCGAGTGAGAATGCAGGCAGTTCTTGTTGCCTGTGATATTTGCAGCTCAAACCTGAAACTTGTTCCATCCAAACTACTGTCTCAAGCCACTGAAAGACTTCGGGATAAAAAGATATCTGTTAGAAAGAGGGCCTTGCAGAAGTTAATTGAAATATATCGAGACTACTGCAAGAAATGTAGTGAAGGAAGCATGAAAATAAGTGATCACTTTGAAGAGATTCCGTGTAAAATTATTATGCTTTGCTATGATAACGATAGTAAGGAGTTCAGGTTGCAGAATGTGGAATCTGTTCTTGCTGATGATCTATTTCCTGAGCATCTTTCTGTCGAAGAAAGGACAAAGCATTGGATACACATGTTTTCTCTTTTCAGTCCTTTTCACGAAAGGGCACTGGATAGTATTTTGGCTCAAAAAAGAAGGTTGCAAAATGAAATGAAAAACTATTTGGCCACACGGAAGAAATTTAAGGAAACTTGTTCTGAAGAAATACAGAAGAAGATTGGAAGCATGTTTACAAAAATGGCTGCATCGTTCTCAGATTCTCACAAAGCTGAAGAGTTCCTTCATAAGTTAAACCAAATTAAAGATAATAATGTGTTTAAATCACTTGAAAGATTGTTGGATGAACAAGATTTCACAATTGGACAAGCCCTCAAAGATGATCTTCTGGTCATGATTGGAGACACCAATCCATATTATGAATTTTTAAGTTTACTCTTCTCCAAATGTTCATCAAACATTTTCAGCTCAGAACATGTCCAGTGCATCTTAAATTATCTTTCCAATGATGATAGTGGAAATAAGGACTTGGAGGATTCTTCTGCAAATCTTCTGCTGGCTGTTGTTAGAATTTTCCCTTCAATGCTGAAAGGCTCGGAAAAGCAGTTCCAAACATTGTTGAAGAAGATGAATCCTATTAATGATAAACTGGTTGAGGTTATTGCAAAAGCAGGCTCTCACAGTGCTTTCAATCTTAGTGATATTTACCCATTTCTTGAGGGAATGTGCTTGGATGGAACTCGAAGACAGGCCAAATTTGCTGTCTCTGCAATTACTGCCTTGAGTTCTAAACACTCAGTTTTCTTATACGAGAGACTAATTGATTCATTATATAGCCAAGAGAATGTCCCCACAATTTTGCAATCTTTGGGATGCATTGCACAATACTCTGTATCAACTTTTGATACTAGAGATGAAGAGATCACATCATATATTTGCCAGAAGATTATTCAAATGGAGCACATGGATGCTGGTCATGATGCAACATCCGTTTGTGATACCTCTCGGTGCAGTGAATCTTGTCAATTAAAGATTTATGGGCTGAAAACACTGGTAAAGAGTTTTTTACCCTATCAGGGGATCCATGTAAAGAAGGATATTAGTGGACTGTTGGACATTTTAACACGAATGCTAAGGGAAAGTGATAGTTTTGTTAATGCAGATGCAGTCTCATGTGAAAATGATAAGGCTCATATAAGATTAGCTTCTGCAAAGGCAATTCTTTGTCTTGCTAGGAAGTGGGATATACATATCACTCCAGAGATTTTTCGCTTCACTATTTTGATTGCGAAGGATACTTCTTCATTTGTAAGGAGCACATTTCTTTGTAAAACACACAAATTGTTGAGGGAGCACAAACTACCTATCAGATTTGCCTGTGCTTTTGCGTTGGCAGTGACAGATTGCATTGAGGATCTGCAATTTCATATCTACAAATATATGGCAGATTTTATTAAGGATTACACTACAATAGGTCGTAAAAGACAAACTTCTGCTGTTCAAGGAGCAATTATTGATTTCCCTGCATACATTTTGGTCTTCTTGGTTCATGTGCTTGCTCAGATTAACGACTTTCAATTTGAAGTCTCTCAAGATGAAAAGTTGTGTGCTGACCTTTGTAGTCCACTCTTCTTTGTTCTGCAAGCATTAGTTGATCTCAGTATTGTTGATGGTGACCTGGACCTTGTTAATGAAGCTGTCTTATATCTATCGAGTATTTTTCGAGCAATCAGAAAAGCTGAAGATGCCGTTGATGCACAAATGACAACCGTAAAATATTTTCAACTTCTTTTGATTAGCTACATTTTTTTGTATACAACTTTATTGGAGTTGAATGTAATGCAGAAGCTGCACATGCTGGCTGAAATTGGGCTATTTACCTTAAATTCATTAAATCATGGTCGGATTTCTCTATCTCAAGCCCCACGACAAGTTTTGCTGCCTTCGTCGTTGTACAGAGTGGGAATCACTAAGAATGATGCTAACTCAAAATGTCAGAAGTCCTTTTTTGAAGAAAGTTATCTAAGTAGAGTCTTTCACATGCTTAAAAGTTCATGTGCCTCACAGGCATACGTTCAAAAGCCTGTGAAAGCAATTCCTAAGCATGCTCGCAAGGGTCAACATGATGTCCCAAAGTCCAATATTAGTATTTACGGCGTACTGGACTTGGTAACTAGCAAACCAGATGATTTGTTAAGGATGGATACAACAAATGATAAAACTATGAGGCCCGATATTCCTTCAGGAAAAAGGAGAAAACACGTGCCTCTTTCTGTTTCTGGATCAATCAGTTTGCATGAATGCTCTACAATTGAGAAGCAACAAAATATAGCATTCAAACATGGTGAAAAGATTTCAGAGAGAAACCTGCTTTCATCTAGTGATTCTGTGAGCTGTAAGGGTTCTCTGGCTGAATCACATGTGGTGACCCGTAAATCGAAAAGAGCTGCAGCTTTGGAGAATTCTGTGACAAGTAGCAAAGATACTGTTCAACATTCCAAATACCCTAGAACCAACCTCAGAGATATGTGTGGCTCAAAGAGACAAGATATACTGGCAGATGTATCAAATAAAAACAACTTCAGCCACGGTGATCCTACTGAACATTCTTCTCTCAGTAGTATAAAGAAAACTGCTGCTACAACAAGAGGCCTGGCAACCAAAGATGGAACATCACTGAATCAGGAGAATAGTGCAGCAAGTGTGCACGGAAGAGGAAAGGGCGCGGAGACATCAGCATCAGAAGTTGTCTACACGAATGCATACGCTGGTAGAACAAGACGTAAAGTGTAA 4173 0.3904 MDEPSLQLVSEIGTHIAQRTRPNKDFIVKSLRKAVNALSQLEQCPQPRSAEKVAAALKPLANALVGGGLLQHADKDVRLLVAICVAELFRVNAPEPPFKAEHLKDVFKLIISLFADLADTASPFFSKRVKVLDTVAQLRCCVLMLEINCVGLVLEMFNVFFSVVRDDHHDSLISAMSSIMINILNESEEASQQLLEVILRNLIKRKKDATCAAYQLAASVIKACTQEDELNLLVCSFLTSCIHDRDTVGCELKEFYHEIIFQVFQCAPQMLLPVIPSLIEELLADQVDIRIKAVNLVGKLFALPEHHVAHKYHDLFVEFLKRFSDKSVDVRISALQCAKAFYMANPFGRESHEIITSVEDRLLDFDDRVRMQAVLVACDICSSNLKLVPSKLLSQATERLRDKKISVRKRALQKLIEIYRDYCKKCSEGSMKISDHFEEIPCKIIMLCYDNDSKEFRLQNVESVLADDLFPEHLSVEERTKHWIHMFSLFSPFHERALDSILAQKRRLQNEMKNYLATRKKFKETCSEEIQKKIGSMFTKMAASFSDSHKAEEFLHKLNQIKDNNVFKSLERLLDEQDFTIGQALKDDLLVMIGDTNPYYEFLSLLFSKCSSNIFSSEHVQCILNYLSNDDSGNKDLEDSSANLLLAVVRIFPSMLKGSEKQFQTLLKKMNPINDKLVEVIAKAGSHSAFNLSDIYPFLEGMCLDGTRRQAKFAVSAITALSSKHSVFLYERLIDSLYSQENVPTILQSLGCIAQYSVSTFDTRDEEITSYICQKIIQMEHMDAGHDATSVCDTSRCSESCQLKIYGLKTLVKSFLPYQGIHVKKDISGLLDILTRMLRESDSFVNADAVSCENDKAHIRLASAKAILCLARKWDIHITPEIFRFTILIAKDTSSFVRSTFLCKTHKLLREHKLPIRFACAFALAVTDCIEDLQFHIYKYMADFIKDYTTIGRKRQTSAVQGAIIDFPAYILVFLVHVLAQINDFQFEVSQDEKLCADLCSPLFFVLQALVDLSIVDGDLDLVNEAVLYLSSIFRAIRKAEDAVDAQMTTVKYFQLLLISYIFLYTTLLELNVMQKLHMLAEIGLFTLNSLNHGRISLSQAPRQVLLPSSLYRVGITKNDANSKCQKSFFEESYLSRVFHMLKSSCASQAYVQKPVKAIPKHARKGQHDVPKSNISIYGVLDLVTSKPDDLLRMDTTNDKTMRPDIPSGKRRKHVPLSVSGSISLHECSTIEKQQNIAFKHGEKISERNLLSSSDSVSCKGSLAESHVVTRKSKRAAALENSVTSSKDTVQHSKYPRTNLRDMCGSKRQDILADVSNKNNFSHGDPTEHSSLSSIKKTAATTRGLATKDGTSLNQENSAASVHGRGKGAETSASEVVYTNAYAGRTRRKV* 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5855 1390 MobiDBLite consensus disorder prediction 1345 1361 - -
Lja1g5855 1390 SUPERFAMILY ARM repeat 69 903 IPR016024 -
Lja1g5855 1390 Pfam Sister chromatid cohesion protein PDS5 protein 25 1113 - -
Lja1g5855 1390 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 4 1311 - -
Lja1g5855 1390 MobiDBLite consensus disorder prediction 1345 1372 - -
Lja1g5855 1390 Gene3D - 6 722 IPR011989 -
Lja1g5855 1390 Coils Coil 498 525 - -
Lja1g5855 1390 MobiDBLite consensus disorder prediction 1194 1217 - -
Lja1g5855 1390 MobiDBLite consensus disorder prediction 1194 1212 - -
Lja1g5855 1390 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 4 1311 IPR039776 GO:0007064
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5855 Lja-Chr1 105117548 105136073 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5855 K11267 - gmx:100777822 1910.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5855 1 105117548 105136073 Lja1g5855 1 105117548 105136073 ECH