Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5852 ATGGAGTTTCTCAGTCAAATCTCTGTTTTTATGCTTCTTTTCACAACACTGAACCCTGTATTTGCTACCACAAAAACAAAAGCTTGTGATTTCCCTGCCATCTTTAACTTTGGTGCCTCAAACTCAGACACTGGAGGCTTGGCTGCTGTTTTTGGAGTACCGACATCACCACCATTTGGAGAGACTTATTTTCGCAGACCAACAGGAAGGTTCTCTGATGGTCGAATCATCCTTGATTTTATAGCTCAGAATTTTGGATTTCCATATCTCAATGCATATCTTGACTCTTTGGGATCCAACTTTTCCCATGGTGCAAATTTTGCAACAGCGGGATCCACAATTAGAATCCCCAATAGTATTATACCTAACGGTAGATCAAGTCCATTCTACCTTGGAATTCAGTACATTCAGTTCAGAGAGTTCATATCCAAAACAAAATTCATTAGACATCAAGGTGGCCTGTTTGCAAGGTTGATGCCTAAAGAAAAGTACTTTTCAAGAGCTTTATACACATTTGATATTGGTCAAAATGATCTTACTATTGGCTTTTCTAATAATACAACTATAGAACAAGCCAAAGATTCTGTAGCTGATATAGTCAACAATTTCACAACACATATCAAGAATTTATACAATTTGGGAGCTAGATCATTTTGGATACACAGCACAGGACCACTTGGCTGTCTACCTGCCATTTTGACTAAATTCCCGTCCGCTGAAAGAGATAGTTATGGTTGTGCAAAGAAATATAATGAAGTTGCTCAGTATTTCAATCAAATATTGAAGGAAGCCTTAGCTCAACTTCGTGGGAACCTTTCTCTAGCTTCAATTATATATGTTGATGTTTACACTCCAAAGTACTCTCTTTTCAGCAACCCAAAAAAATACGGATTTGAGCAACCTCTAATAACTTGTTGTGGCTATGGTGGGAAATACAACTACGACGATGGAGTTCAATGTGGAACAACTATAAATGCAAATGGTAATAATATATTTGTGGGCTCATGTAAAAGGCCATCTTCTAGAGTGATATGGGATGGAACCCACTTTACCGAGGCAGCTAACAAGGTTGTCTTTGATTTAACATCTACTGGGGCGTTCTCTGATCCACCCATTCCCTTGAACCTGTCATGTAGCAGAAATCTCACTAAAAGTTAA 1158 0.3834 MEFLSQISVFMLLFTTLNPVFATTKTKACDFPAIFNFGASNSDTGGLAAVFGVPTSPPFGETYFRRPTGRFSDGRIILDFIAQNFGFPYLNAYLDSLGSNFSHGANFATAGSTIRIPNSIIPNGRSSPFYLGIQYIQFREFISKTKFIRHQGGLFARLMPKEKYFSRALYTFDIGQNDLTIGFSNNTTIEQAKDSVADIVNNFTTHIKNLYNLGARSFWIHSTGPLGCLPAILTKFPSAERDSYGCAKKYNEVAQYFNQILKEALAQLRGNLSLASIIYVDVYTPKYSLFSNPKKYGFEQPLITCCGYGGKYNYDDGVQCGTTINANGNNIFVGSCKRPSSRVIWDGTHFTEAANKVVFDLTSTGAFSDPPIPLNLSCSRNLTKS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5852 385 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 11 382 - -
Lja1g5852 385 CDD SGNH_plant_lipase_like 32 365 IPR035669 -
Lja1g5852 385 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 11 382 - -
Lja1g5852 385 Gene3D SGNH hydrolase 21 364 IPR036514 -
Lja1g5852 385 SUPERFAMILY SGNH hydrolase 165 361 - -
Lja1g5852 385 Pfam GDSL-like Lipase/Acylhydrolase 34 361 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5852 Lja-Chr1 105085115 105089587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5852 23 377 Acyl Lipid Metabolism Gene Families AT4G10950 27.198 4.05e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5852 - - gmx:100779094 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5852 1 105085115 105089587 Lja1g5852 1 105085115 105089587 ECH