Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5848 ATGACGGATAAGAAGAGATGGTTTCGGAAGCGGAAGTCTTCTGAGAAGAGCTCTGGCGATACTGAAAGTTCAGGATCCGTTTCATCTCATTCTGAGAGGTACTCAGATGAACAGCAGGAGGCCTCAAAGGAATCTCCTAACGGAAGCAATCAGTCCCCTGATGTAACCTCAAAAGTCACGGCCTGTGCTGAAGATGTTAATGATATTTCCATTATCAATGCACAATTGCCTGAAGAAATCACCCCAAAACCTGTACCCACTACAGGAATCATAAATCGTTGTTCAGTAGAGGAAGATGAAAATGGAGAAAATAGAAATATGCAAAATGGAAACGAAGGAGACCTAAATGATGGTTCAAGGAATATATCTGAGAGGCTATCTGCTGCACTTGTGAATGCCAATGCCAAAGAAGACTTGGTTAAGCAGCATGCCAAAGTTGCTGAAGAAGCCATTGCTGGCTGGGAAAAGGCGGAAAACGAAGTGGTACTTTTAAAGAAGCAACTTGATTCAGTCACCGTCAGGAATTCAGCTCTTGAAGATCGAGTTACTCATCTAGATGGAGCACTTAAGGAGTGTGTTAGGCAGCTAAGACAGACGAGAGAAGAGCAGGAAGAGAATATCCATGATGCTGTAGCAAGGAAGACTCTTGAATTGGAATCAGCCAAAGCTAAACTTGAGAGCAAGCTCATTGATCTCCAGAGCAAATTAGATGCTGCAAATGCGAGATCTAATTTTGATCTTGATATGAGTCGTAAGGTTGAAAGTTTGGAGAAAGAGAACATGGCTCTCAGGCATGAGATGCTAGCTCAATTAGAAGAGCTGGAAATTAGGACAATTGAGAGGGACTTAAGCACTCAAGCTGCAGAGACAGCAAGCAAGCAACATTTGGAAAGCATCACGAAGGTAGCCAAGCTTGAGGCTGAGTGCTGGAGACTAAAGAGCATGGCTTCCAGAGCATCTGTAGTTATTGATCATAAATCCGCCGTTGGATCTCTCACAGATAGTCAATCAGACAGTGGGGAGCGGCTTGCTGCAGTGGAGATTGAAACCCGCAAGATGAGTGGCTCAGAACCGAACAAGTCTGAGCCAAGTTGTTCTGACTCATGGGCATCCGCACTAATCGCTGAGCTTGATCAGTTCAAGAACGAAAAGTGCAGAAAAGCTCCATCCAGCTCTGTTAAAATTGACCTAATGGATGATTTTCTTGAAATGGAACGACTTGTTGCATTGCCGCTGGAGACTAAGGATGAAAGCAGTGTCCAGGAGTCTGTTGTTTCCAATCAGCGCATTGACAAAGAAAGCTCTCTCAAGGCTGAGTTTGAGATCATGAGTCAACAAATGGATGAACTAAAAGAGAAGCTAGAGAAGGTGGAAGCAGATAAAGCTGAACTAGAGATAGCTTTGATGAAAAGTGAAGAGTATATTGAGGAGTCACAACTCCAGTTGAGGGAGGCAGAAGAGAAATTGGAGGAGTTGCAAAGCGAGCTAGAAAATGCCTACCAATCAAAGCAGAAGATAGAAAATAACCTGATGAGCATGGACGCAGAGGCTCAGACATTATCTATGAAGGTTGATTTATTAGAAGCGGAGGTCGATCAGGAGAGGGCCGTGTCACATGAAATTGCAATGAAGTGTAAGGACCTGGAGGAAGAGTTAGGAAGAAGATCTGCAAAGCTTGGCTTATTAGAAGCTGAGCTTGATAAGCAAAGGTCCGTGTCTGATGAAATCACAATGAAGTGTAAGGACCTAGAGGAAGAGCTAGAAGGCAAAACTGCAAAGGTTGACTTATTAGAAGCAGAGATTGTTAAAGAGAGAGCTGAGTCAGATAAAATTGCAACTAAGTGTAAGAGCCTGGAGGAAAAGCTGGAGAGCAAATCTGCGAAGATAGATTTATTAGAAATAGAGGTTGATAAGGAGAGAGCTATGTCTGAAGAAATTGCAATGAAGTGTAAGGAGTTGGAGGAAGAGATACTCAGGTCAACTAACTCATATGTTGAAAAGAAGATTAAGCAGGAGGACCTAGCATTAGCTGCCGGAAAGCTTGCCGAGTGTCAGAAAACAATAGCATCTTTGGGGAATCAGTTAAAATCCTTGGCTACTCTTGAAGATTTCCTCATCGATACAGCAAGCATTCCTGCAACTCCGCCACTCATTGCACATACTGACGGAGAGATGTGGAAGTTGCATTCAAATGGCACATTTTCACCCAAAAGAAATTCCAGTTCTTCCAGGATGGCTGATGGTAGCTCTGGACCGTTGTTAATCAGAAATGAGGAAAGCTCACCACCCTCATCATCATCTTCAACTTCATCAGCACCCTTGCCGAACCATGTCAGCTCTGAGAAGAGTCGGAATGGCTTTGCGAAATTTTTCTCGCGAACCAAGAGTGGGATCCGGCTAGAAATTTAG 2409 0.4363 MTDKKRWFRKRKSSEKSSGDTESSGSVSSHSERYSDEQQEASKESPNGSNQSPDVTSKVTACAEDVNDISIINAQLPEEITPKPVPTTGIINRCSVEEDENGENRNMQNGNEGDLNDGSRNISERLSAALVNANAKEDLVKQHAKVAEEAIAGWEKAENEVVLLKKQLDSVTVRNSALEDRVTHLDGALKECVRQLRQTREEQEENIHDAVARKTLELESAKAKLESKLIDLQSKLDAANARSNFDLDMSRKVESLEKENMALRHEMLAQLEELEIRTIERDLSTQAAETASKQHLESITKVAKLEAECWRLKSMASRASVVIDHKSAVGSLTDSQSDSGERLAAVEIETRKMSGSEPNKSEPSCSDSWASALIAELDQFKNEKCRKAPSSSVKIDLMDDFLEMERLVALPLETKDESSVQESVVSNQRIDKESSLKAEFEIMSQQMDELKEKLEKVEADKAELEIALMKSEEYIEESQLQLREAEEKLEELQSELENAYQSKQKIENNLMSMDAEAQTLSMKVDLLEAEVDQERAVSHEIAMKCKDLEEELGRRSAKLGLLEAELDKQRSVSDEITMKCKDLEEELEGKTAKVDLLEAEIVKERAESDKIATKCKSLEEKLESKSAKIDLLEIEVDKERAMSEEIAMKCKELEEEILRSTNSYVEKKIKQEDLALAAGKLAECQKTIASLGNQLKSLATLEDFLIDTASIPATPPLIAHTDGEMWKLHSNGTFSPKRNSSSSRMADGSSGPLLIRNEESSPPSSSSSTSSAPLPNHVSSEKSRNGFAKFFSRTKSGIRLEI* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5848 802 MobiDBLite consensus disorder prediction 98 120 - -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 562 625 - -
Lja1g5848 802 Coils Coil 615 656 - -
Lja1g5848 802 SUPERFAMILY Tropomyosin 434 568 - -
Lja1g5848 802 MobiDBLite consensus disorder prediction 1 60 - -
Lja1g5848 802 MobiDBLite consensus disorder prediction 1 18 - -
Lja1g5848 802 Coils Coil 545 607 - -
Lja1g5848 802 MobiDBLite consensus disorder prediction 41 58 - -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 3 503 - -
Lja1g5848 802 Pfam Filament-like plant protein, long coiled-coil 354 434 IPR008587 -
Lja1g5848 802 Pfam Filament-like plant protein, long coiled-coil 597 700 IPR008587 -
Lja1g5848 802 Pfam Filament-like plant protein, long coiled-coil 136 242 IPR008587 -
Lja1g5848 802 Pfam Filament-like plant protein, long coiled-coil 243 315 IPR008587 -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 499 556 - -
Lja1g5848 802 MobiDBLite consensus disorder prediction 732 786 - -
Lja1g5848 802 Coils Coil 215 242 - -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 499 556 - -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 562 625 - -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 3 503 - -
Lja1g5848 802 Coils Coil 253 273 - -
Lja1g5848 802 MobiDBLite consensus disorder prediction 106 120 - -
Lja1g5848 802 MobiDBLite consensus disorder prediction 729 786 - -
Lja1g5848 802 Coils Coil 193 213 - -
Lja1g5848 802 Coils Coil 433 530 - -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 622 801 - -
Lja1g5848 802 SUPERFAMILY Tropomyosin 558 700 - -
Lja1g5848 802 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 622 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5848 Lja-Chr1 105005268 105010143 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5848 - - mtr:MTR_1g030010 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5848 1 105005268 105010143 Lja1g5848 1 105005268 105010143 ECH