Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5846 ATGAATGCCATAGCCACTGCTTCTGCTCCTACACTTCCAATCTTCTGTAGAACATCCAACACCAAAAAGGGTTTGAAAGGTAAATTTAGAGTGTTTGCTGTATTTGGAGAAGAGAAGAGAAATCCATGGGGTGCGCTCTTTGACGTAGAGGATCCAAGATCGAAATTTCCACAGCTAAAAGGGAAGTTTTTGAATGTATATCAAGCCCTGGAATTGGCTAGGTTTGATATTCAGTACTGTGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGACAAGGTGGTCGATGTTCTTAATCCGCTAGCTCGTGAATTTAAGTCCATTGGCACCATGAAAAAGGAGCTAGCTGAGTTGCAGGAAGAATTGGAAGATGCACACAGACAGGTCCATATATCGGAAGCAAGGGTTGGCACTGCTTTAGATAAACTAGCTTACATGGAAGAATTAGTAAATGATAGGCTGTTACAGGACAGAAGCACGGCTGAAGTTGCCCAGACACCCTCTCTTCCCAGTACTTCTACAAAATCTGAGGATATTCCCAGTACTTCTACAAAATCTGGGGATATTCAGAGAAGAAGGAAGCCACGGAAAAGCTTGAACATCTCGGGTCCGGTTCAGTCATACCATCCCAACTTGAAGAATTTCTGGTATCCTGTTGCCTTCTCTTCTGGCCTAAAGGACGATACCATGATCCCAATAGAATGTTTCGAGGAACCATGGGTTATCTTTCGAGGGAAAGATGGGAGACCTGGATGTGTCCAGAATACCTGTGCACACAGAGCATGTCCTCTGCACCTTGGTTCTGTAAATGAGGGTCGTATCCAATGCCCCTACCATGGCTGGGAATATACCACTGATGGAAAATGTGAGAAGATGCCATCAACTAGATTGCTTGATGTGAAGATAAAATCAGTTCCGTGTTTTGAGAAAGAGGGAATGATTTGGATTTGGCCTGGCAGTGACGCCCCAGCTGCCACACTTCCATCGTTATTACCTCCTTCTGGATTTCAAATCCATGCTGAGCTTGTCATGGAACTTCCTGTTGAGCATGGGTTACTTTTAGACAATCTTTTGGATCTTGCACATGCCCCTTTTACTCACACTTCAACGTTTGCTAAGGGGTGGACTGTCCCCAGTATGGTGAAGTTTTTGACACCTGCATCTGGCCTGCAAGGATACTGGGATCCCTATCCAATTGATATGGAGTTTCGGCCGCCTTGCATGGTTCTATCAACAATTGGAATTTCGAAGCCTGGGAAACTGGAGGGACAAAGCACTAAACAATGCGCAACGCACCTGCACCAACTTCATGTCTGCTTACCATCTTCAAAGGACAAAACAAGATTGCTATACAGAATGTCTCTGGATTTCGCTCCTTTGCTTAAGCATATACCTTTCATGGAACATCTATGGAGGCATTTCGCAGAGCAGGTTTTAAATGAGGATCTACGGCTAGTGTTGGGGCAGCAAGAGCGAATGAACAATGGTGCAAATATATGGAATTTCCCAGTTTCATATGACAAGCTTGGGATAAGGTACAGGCTATGGAGAGATGCATTAGAGAGTGGAGCTAGGCAACTACCCTTCACCTCATACCTAGAGAATACAGATTAG 1626 0.4477 MNAIATASAPTLPIFCRTSNTKKGLKGKFRVFAVFGEEKRNPWGALFDVEDPRSKFPQLKGKFLNVYQALELARFDIQYCDWRARQDVLTIMLLHDKVVDVLNPLAREFKSIGTMKKELAELQEELEDAHRQVHISEARVGTALDKLAYMEELVNDRLLQDRSTAEVAQTPSLPSTSTKSEDIPSTSTKSGDIQRRRKPRKSLNISGPVQSYHPNLKNFWYPVAFSSGLKDDTMIPIECFEEPWVIFRGKDGRPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLLDVKIKSVPCFEKEGMIWIWPGSDAPAATLPSLLPPSGFQIHAELVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWTVPSMVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCATHLHQLHVCLPSSKDKTRLLYRMSLDFAPLLKHIPFMEHLWRHFAEQVLNEDLRLVLGQQERMNNGANIWNFPVSYDKLGIRYRLWRDALESGARQLPFTSYLENTD* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5846 541 MobiDBLite consensus disorder prediction 162 209 - -
Lja1g5846 541 Coils Coil 105 139 - -
Lja1g5846 541 Gene3D - 214 336 IPR036922 GO:0051537
Lja1g5846 541 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 67 534 - -
Lja1g5846 541 SUPERFAMILY Bet v1-like 316 524 - -
Lja1g5846 541 Pfam Rieske [2Fe-2S] domain 220 301 IPR017941 GO:0051537
Lja1g5846 541 Gene3D - 342 530 - -
Lja1g5846 541 MobiDBLite consensus disorder prediction 162 190 - -
Lja1g5846 541 Pfam Pheophorbide a oxygenase 407 501 IPR013626 GO:0010277
Lja1g5846 541 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 67 534 - -
Lja1g5846 541 SUPERFAMILY ISP domain 215 324 IPR036922 GO:0051537
Lja1g5846 541 CDD Rieske_RO_Alpha_Cao 203 331 - -
Lja1g5846 541 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 261 283 IPR015881 GO:0005506|GO:0051537
Lja1g5846 541 Pfam Vanillate O-demethylase oxygenase C-terminal domain 353 377 IPR044043 GO:0016491
Lja1g5846 541 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 220 320 IPR017941 GO:0051537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5846 K13600 - gmx:100806298 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5846 1 104975666 104980860 Lja1g5846 1 104975666 104980860 ECH