Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g5838 | ATGTGCCACCTCGTTGTCTTCTTCTTCCTTCTCCCTCTCATTGCATCGCCCTTCATCACTCACGTCTCTGCAAACGACCATGAAGCCAAGGACAAGGAGTTCGTGCTCACATTGTGTCACTCCAACTTCTCCGACACCGTCACGAAGCAAGATTTCATCGTCGTCGAGTTCTACGCACCTTGGTGTGGCCACTGTAAGAAGCTTGCTCCAGAGTATGAAAAAGCTGCTTCTATCTTGAGTAATCATGATCCTCCAATTCTTTTGGCTAAAGTTGATGCCAATGAGGAGAAGAACAGAGGACTTGCAAAGGAATTTGACATTAAGGGATTTCCGACAATCAAAATTCTGCGAAATGGGGGTAAGGTTATTCAAGAATACAAAGGTCCCCGTGAAGCATATGGTATTGTTGACTATTTGAAGAAGCTAAGTGGTCCTGCATCAACTGAAATTAAATCTGTTGATGATGCTAGTGGTTTTGTAGGTGAAAATAAAGTTGTTATTGTTGGTGTTTTCCCAAAATTTGATGGGCAAGAGTTTGAGAACTTCACCGCATTGGCAGAGAAATTGCGTTCTGATTATGATTTTGGTCACACCTTGGATGCCAGACATCTTCCACGGGGAGAATCATCAGTGAATGGGTCCATGGTTAGATTGTTCAAGCCATTTGATGAGCTATTTGTTGACTTCCAAGATTTCCATGTGGAAGCTTTAGAGAAATTTGTGGAAGAATCTAGTGTTCCCATTGTGACTGTCTTTAACAATGACCCAAGCAATCACCCTTATGTTGTCAAATTCTTTAACAGTCCTCATGTAAAGGCATTGCTATTCATTAACTTAACTTATGGCACTGCTGATATTCTCAAACTAAAATACCATGAAACTGCTGAGCAATATAGGCAAGAGGGCATAAGCTTTCTAGTTGGAGATGTTGAGGCTAGTCAAGGTGCATTCCAGTATTTTGGCCTTAAGGAAGACCAAGTGCCTCTAATTATCATTCAAGAAAACGATGGGAAGAAATTTTTTAAATCCAATCTGGAACCTGATCACATTTCAACTTGGTTGAAGGCATATAAGGATGGAAATATTGAACCATATCAAAAGTCTGAACCTATCCCTGAAGTTAACAACGAACCTGTTAAAGTGGTAGTTGCAGACAGTCTTGGACGACATATTCTGCTAGAGTTTTATGCTCCTTGGTGTGGTCATTGCAAAAAGTTGGCTCCAATATTGGAGGAAGTTGCTGTTTCATATCAAAGTAATCCTGATGTTCTTATCGCAAAGCTGGATGCAACTGCCAATGATATCCCAAGCGAGACCTTTGATGTACAAGGTTATCCAACTCTGTACTTCAAGTCAGCAAGTGGAAAAATATCAAAGAATACAGATATTCCATTCTTAGGATGTAGACACACTAAGTTATATGCAGGACCTACATGTTTTGTAACCTAG | 1449 | 0.4051 | MCHLVVFFFLLPLIASPFITHVSANDHEAKDKEFVLTLCHSNFSDTVTKQDFIVVEFYAPWCGHCKKLAPEYEKAASILSNHDPPILLAKVDANEEKNRGLAKEFDIKGFPTIKILRNGGKVIQEYKGPREAYGIVDYLKKLSGPASTEIKSVDDASGFVGENKVVIVGVFPKFDGQEFENFTALAEKLRSDYDFGHTLDARHLPRGESSVNGSMVRLFKPFDELFVDFQDFHVEALEKFVEESSVPIVTVFNNDPSNHPYVVKFFNSPHVKALLFINLTYGTADILKLKYHETAEQYRQEGISFLVGDVEASQGAFQYFGLKEDQVPLIIIQENDGKKFFKSNLEPDHISTWLKAYKDGNIEPYQKSEPIPEVNNEPVKVVVADSLGRHILLEFYAPWCGHCKKLAPILEEVAVSYQSNPDVLIAKLDATANDIPSETFDVQGYPTLYFKSASGKISKNTDIPFLGCRHTKLYAGPTCFVT* | 483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g5838 | 482 | Gene3D | Glutaredoxin | 142 | 250 | - | - | |
| Lja1g5838 | 482 | CDD | PDI_b'_family | 261 | 358 | - | - | |
| Lja1g5838 | 482 | SUPERFAMILY | Thioredoxin-like | 148 | 247 | IPR036249 | - | |
| Lja1g5838 | 482 | SUPERFAMILY | Thioredoxin-like | 345 | 457 | IPR036249 | - | |
| Lja1g5838 | 482 | ProSiteProfiles | Thioredoxin domain profile. | 10 | 144 | IPR013766 | - | |
| Lja1g5838 | 482 | PANTHER | PROTEIN DISULFIDE ISOMERASE | 21 | 459 | - | - | |
| Lja1g5838 | 482 | SUPERFAMILY | Thioredoxin-like | 35 | 145 | IPR036249 | - | |
| Lja1g5838 | 482 | TIGRFAM | ER_PDI_fam: protein disulfide isomerase | 35 | 456 | IPR005792 | GO:0003756 | |
| Lja1g5838 | 482 | ProSitePatterns | Thioredoxin family active site. | 392 | 410 | IPR017937 | - | |
| Lja1g5838 | 482 | ProSitePatterns | Thioredoxin family active site. | 54 | 72 | IPR017937 | - | |
| Lja1g5838 | 482 | TIGRFAM | pdi_dom: protein disulfide-isomerase domain | 39 | 141 | IPR005788 | GO:0003756 | |
| Lja1g5838 | 482 | Pfam | Thioredoxin-like domain | 171 | 355 | - | - | |
| Lja1g5838 | 482 | Pfam | Thioredoxin | 35 | 141 | IPR013766 | - | |
| Lja1g5838 | 482 | Pfam | Thioredoxin | 388 | 458 | IPR013766 | - | |
| Lja1g5838 | 482 | Gene3D | Glutaredoxin | 253 | 377 | - | - | |
| Lja1g5838 | 482 | CDD | PDI_b_family | 147 | 243 | - | - | |
| Lja1g5838 | 482 | PANTHER | PROTEIN DISULFIDE-ISOMERASE | 21 | 459 | - | - | |
| Lja1g5838 | 482 | SUPERFAMILY | Thioredoxin-like | 244 | 376 | IPR036249 | - | |
| Lja1g5838 | 482 | Gene3D | Glutaredoxin | 378 | 464 | - | - | |
| Lja1g5838 | 482 | Gene3D | Glutaredoxin | 21 | 141 | - | - | |
| Lja1g5838 | 482 | PRINTS | Thioredoxin family signature | 106 | 117 | - | - | |
| Lja1g5838 | 482 | PRINTS | Thioredoxin family signature | 61 | 70 | - | - | |
| Lja1g5838 | 482 | PRINTS | Thioredoxin family signature | 53 | 61 | - | - | |
| Lja1g5838 | 482 | CDD | PDI_a_family | 41 | 139 | - | - | |
| Lja1g5838 | 482 | ProSiteProfiles | Thioredoxin domain profile. | 357 | 482 | IPR013766 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g5838 | Lja-Chr1 | 104892107 | 104907463 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g5838 | K09580 | - | gmx:100170705 | 714.916 |
Event-related genes