Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5836 ATGGATTTGAAATTCTGGGTATTAGCATCATCTTCATTGCACACAGTTTTGCACTTTCTGGTATTTTCTTCCATTTTCCCACTCGCTTTCTCGGATGTCAATCAACCCCACAACGCCAAAAACCCCCGCAACACAGAGAATCGGCTTGGCTCCTCAGCTGTTTTCAAGGTTCAAGGGAATGTTTACCCTCTTGGGTATTACACAGTGTTTATTAACATTGGCCATCCCCCCAAGTTTTACGACCTTGATATTGACTCAGGTAGTGACCTCACTTGGATTGAGTGTGATGGACCATGTAAAGGTTGCACCAAGCCTCTGGATCAGCTTTATAGACCCAACAACAACCTCGTCAATTGTGTGGATCAGTTGTGTGATGGAGTGCGCCTATCAACAGACAATCAATGTGCTGCCCCAGATGAACAATGTGACTATGAGGTTGAGTATGCAGATCATGGATCATCTCTGGGTGTGCTAGTCCGAGACCACATTCACCTCCATTTCACCAATGGCTCAGTGGTGCGCCCTAAGATAGCTTTTGGGTGTGGATATGATCAAAAGTATTCTGGTCCTATCACCCCACCTTCTACAGCAGGGGTCATTGGCCTTGGGAATGGCAGATCAAGCATTGTGTCCCAACTTCATTCTCTGGGTCTGATTCGCAATGTGGTTGGCCACTGCTTAAGTGCGCAAGGAGGAGGGTTTTTATTCTTTGGAGATGATCTTATTCCGTCATCAGGAATTGTTTGGACACCCATGTTGCCTAGTTCTATGGAAAAACACTATAGCTCAGGACCAGCAGAACTTCTGTTCAATGGAAAGCCTACTACTGTTAAGGGTCTTGAACTAATCTTTGACAGTGGGAGCTCTTACACATATTTCAATGCCCAAACATATCAAGCTATAGTTGATTTGGTAAGTAGTGATTTAAAGGGAAAACAGTTGAAAAGAGCAACAGATGATCAAACACTTCCAATATGTTGGAAGGGTACAAAGTCTTTCAAATCTGCAAGTGATGTCAAGAACCATTTCAAGCCCCTAGCATTGAGATTCACAAAAACAAAGAACTTGCAAATGCTAATACCGCCCGAAGCTTATCTTATTGTCACGAAACATGGCAATGTTTGCTTGGGGATTCTAAATGGTTCTGAAGTAGGGCTTGGAGATCTCAACATAATAGGCGACATCTCTCTACAAGATAAAATGGTGATTTATGACAACGAGAAGCAGCTTATTGGATGGGTTTCTTCCAACTGTGATACGCTTCCCAGTGTTGATCGTGATTTTGAAGGCCGTTTTTCACACCCACAAGCAGCTAATATCTTTGCTGAGAGGTGCCCAGCAACTTATGAAGTAACAGACAGTTAA 1365 0.4337 MDLKFWVLASSSLHTVLHFLVFSSIFPLAFSDVNQPHNAKNPRNTENRLGSSAVFKVQGNVYPLGYYTVFINIGHPPKFYDLDIDSGSDLTWIECDGPCKGCTKPLDQLYRPNNNLVNCVDQLCDGVRLSTDNQCAAPDEQCDYEVEYADHGSSLGVLVRDHIHLHFTNGSVVRPKIAFGCGYDQKYSGPITPPSTAGVIGLGNGRSSIVSQLHSLGLIRNVVGHCLSAQGGGFLFFGDDLIPSSGIVWTPMLPSSMEKHYSSGPAELLFNGKPTTVKGLELIFDSGSSYTYFNAQTYQAIVDLVSSDLKGKQLKRATDDQTLPICWKGTKSFKSASDVKNHFKPLALRFTKTKNLQMLIPPEAYLIVTKHGNVCLGILNGSEVGLGDLNIIGDISLQDKMVIYDNEKQLIGWVSSNCDTLPSVDRDFEGRFSHPQAANIFAERCPATYEVTDS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5836 454 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 13 428 - -
Lja1g5836 454 Pfam Xylanase inhibitor C-terminal 281 413 IPR032799 -
Lja1g5836 454 Gene3D Acid Proteases 240 422 IPR021109 -
Lja1g5836 454 CDD nucellin_like 65 418 IPR033823 GO:0004190
Lja1g5836 454 Pfam Xylanase inhibitor N-terminal 67 239 IPR032861 -
Lja1g5836 454 SUPERFAMILY Acid proteases 59 422 IPR021109 -
Lja1g5836 454 PRINTS Pepsin (A1) aspartic protease family signature 73 93 IPR001461 GO:0004190|GO:0006508
Lja1g5836 454 PRINTS Pepsin (A1) aspartic protease family signature 282 293 IPR001461 GO:0004190|GO:0006508
Lja1g5836 454 PRINTS Pepsin (A1) aspartic protease family signature 390 405 IPR001461 GO:0004190|GO:0006508
Lja1g5836 454 ProSiteProfiles Peptidase family A1 domain profile. 67 414 IPR033121 -
Lja1g5836 454 Gene3D Acid Proteases 42 239 IPR021109 -
Lja1g5836 454 PANTHER ASPARTYL PROTEASES 13 428 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5836 Lja-Chr1 104848520 104852111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5836 51 422 Miscellaneous Gene Families AT1G44130 58.713 2.29e-167 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5836 - - gmx:100790299 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5836 1 104848520 104852111 Lja1g5836 1 104848520 104852111 ECH