Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5835 ATGTCTTCCACCGCCGGTCACCGCCGCTCCTCCCAACGAGCCTCCGCCACCGCGTCACGAAACTCGCCGGCGGCCGTTGCGAAACCTGGCGGAAGACCTACCACTCCGTCTTCCTCCTCCACGTCATCGAGAGCTTCCGTATCTCCTGTGGTGGTTGCAGCTGCTGCCGCGGCGAAGGAGAATGTAACCGTCACCGTCCGATTCCGACCCCTCAATGGCAGAGAAGTGAGTAAAGGGGACGAGGTAGCGTGGTATGCGGATGGTGATCGTGCAGTGAGAAATGAATACAATCCTGAACTTGCTTATGGTTTTGATAGGGTATTTGGGCCTGCAACAACAACTCGGCATGTTTATGATGTGGCTGCTCAGCATGTTGTAAGTGGTGCCATGGAAGGGATTAATGGTACCGTTTTTGCATATGGTGTTACGAGTAGTGGAAAGACTCATACCATGCATGGGGAGCAAAAGTCACCTGGAATAATCCCTCTTTCAATAAAGGATGTGTTTAGTATTATACAGGAGACTCCTGGACGGGAATTCCTACTCCGTGTCTCATATCTTGAGATTTACAATGAGGTCATTAACGACTTGCTGGATCCACTTGGGCAGAACCTAAGAATACGAGAGGATGCTCAGGGGACTTATGTTGAAGGAATCAAGGAGGAAGTTGTTCTATCCCCTGCTCATGGCCTTTCTTTGATCGCTACAGGAGAAGAGCATAGACATGTGGGTTCAAATAATTTCAATCTAGTTAGCAGTCGAAGCCACACTATATTCACCTTGACTATCGAAAGCAGTCCGCGAGGGGAAAATATTGGGGAAGAGGATGTGACATTGTCCCAACTGCACTTAATTGATCTTGCGGGGTCTGAAAGTTCAAAAACTGAGACAACTGGTTTGCGGAGGAAAGAGGGTTCCTATATTAATAAAAGTTTGCTTACTCTTGGAACGGTGATCGCTAAATTAACAGATGGGAAGGCAACTCATGTTCCTTATCGAGATTCAAAGCTCACCCGTTTGTTGCAATCATCCCTTAGTGGCCATGGAAGAATTTCTCTCATTTGCACAGTTACTCCTGCCTCTAGCAGTGGTGAAGAGACACACAACACATTAAAATTTGCACACCGGAGTAAGCATGTTGAAATCAAGGCCTCTCAGAATAAGATTGTAGATGATAAGTCTCTGATCAAAAGGTATCAGAGGGAAATTTCTGAGTTAAAGCAGGAGCTTCAGCAGTTGAAGCGTGGCATGATTGAGAATCCCCATATGGTCGCGTCTTCACAAGAAGATCTGGTGACTCTGAAGATCCAGTTGGAAGCTGGCCAATCCAAATTAAAGTCAAGATTGGAAGAGGAGGAACAAGCTAAAGCAGCTTTAATGGGAAGAATTCAGCGATTAACCAAATTAATCTTAGTTTCTACAAAGAATACAATGTCATCAAGCACTCCTGAAAGGCCTAGCTATAGGCGAAGGCATTCTTTTGGGGAAGACGAGCTAGCATATTTGCCTGATAGAAAACGTGGTACCTTGATTGAGGATGACGTTGGGAGCCATCCTTCAGCTCCTTCAGGGGAAGAAAAGGATGATGTTACCAATTTAGATGAACTGGTTAAGGAATATAAAAGGAACAAAAGACGTGGAATGCTTGGTTGGTTGAAGCTGAGAAAACCTGATAATCTCGATGGATTATCGCCTAATGTTGATAGTGAGGGCTCTACAAATGGGTCACCTTCATCATTAACACCAAATAGAGTTATGCTTCATGATATGAAAGATTCACGCAGGAATTCAGTCAGTAGAAAGGATAATGCTTCAGCTCTCAATTCTTTTCCAGGAAGAACCCAAGCAGGTGACTTGTTCAGTGTAACTGTTGGAGGTCGTCAACTTCCTCCGTCAGGGACTACTATTACAGATCAAATGGATCTTCTTCGTGAACAAGTAAAGATGTTGGCTGGGGAGGTGGCATTCTGTATTAGTTCTCTGAAGAGACTATCTGAACAAGCAGCTAACAACCCTGAAGATATCCAAGTACAAGAGGGCATGCATAAGTTGAAGGATGAAATTTACCAAAAAAAGAAACAAATCCATATTTTGGAGCAACGGATGATTGGATCACTAGGACATGCACCAAGTAACAGTGAAATATCCCTGACCCTGTCCAAGCTTACCACTGAGCTCAATGAAAAAATTTGTGAACTTGAGATCAAGTCAGCCGACAATAGGATACTTCAAGAGCAACTGCAGTTGAAGAATTCAGAGAATGTGGAGATGCAAGAAACAATTCTTTCACTAAGGAAACAGATAAATTTGTTGCTTGATGAAACCTCAACCAATTCTCAACAGTTTTATGATAGGGAGATTGACTATTTTAAAGAGAGAAAGAGTGATGAAACACATATGGTAAAAAACATGAATGCAGTAGTTTCTCCAGCACACTTCAACCAAGGAAGTAGTGATTCAATAAAAAATTCCCAAATTCTTATGCAGGCAGCTGAAATAGAGAATTTAAGGCAAGAAAATGTGAGATTGGTTGAAGAGAAAGATGGGCTTGAAATTCAAACCCAGAAGCTTGCAGAGGAAGCTTCATATGCAAAAGAGTTGGCATCAGCTGCTGCATTTGAATTACGAAACCTGGCTGAAGAAGTAACTAAACTTACTTATGAAAATGCAGAACTCACTGGGGATTTGGAAGACGCAAAAGAGGCCCGTTGCAAATCTAACTTTTGTCATATATCTTCATATGATTCCAAGCAAAGTAGCAATAATAGTTTTCAACGAGATGGGCAACCGGAAAAGTTTGGAACTGAAGTTCTTACTGAGGAGTTGAAGAAGAACCTTAGTGCTAGATTCCAAAGAGAAGCTGCATTAGAAGCAGCTCTATCACTCAAAGATGAAATAGAAGCTGACCTAAGAATAGCACTTGATGAAATAAAACATCAGAAACATGATTTGGAAGATGAACTCAGAAGCATGCATGTGCTGGTAGCAAAAATGAGAAAGTCTGGCACTAATATTGAGGATAAGTCCATTGTTCATATGCCTAATGATATACAAACTAAGGCTAAAAATAGACTTCCCCCATCTAATGGTTACTCTTTTAGAAAACAATACAAAGAGGATGAAACTTCAGGGAGCATGGAAGATATGATTGCATTGGAAGAACTGAAGGCTGGTTTTCAAAGAGAAAGAAGAAGATGCAAAGAGCTAGAAAGGCTAATTTCTAGAATGAAGGGTGAAGACATTGCTGGGATGGATGTTATGGCCCTTGAAGAGCTTCAAAACCTTCATATTGAGGCAATAACAAATATTTGCCAAGCAAAGTATGCAAATCAAGGCTTCTAG 3342 0.4219 MSSTAGHRRSSQRASATASRNSPAAVAKPGGRPTTPSSSSTSSRASVSPVVVAAAAAAKENVTVTVRFRPLNGREVSKGDEVAWYADGDRAVRNEYNPELAYGFDRVFGPATTTRHVYDVAAQHVVSGAMEGINGTVFAYGVTSSGKTHTMHGEQKSPGIIPLSIKDVFSIIQETPGREFLLRVSYLEIYNEVINDLLDPLGQNLRIREDAQGTYVEGIKEEVVLSPAHGLSLIATGEEHRHVGSNNFNLVSSRSHTIFTLTIESSPRGENIGEEDVTLSQLHLIDLAGSESSKTETTGLRRKEGSYINKSLLTLGTVIAKLTDGKATHVPYRDSKLTRLLQSSLSGHGRISLICTVTPASSSGEETHNTLKFAHRSKHVEIKASQNKIVDDKSLIKRYQREISELKQELQQLKRGMIENPHMVASSQEDLVTLKIQLEAGQSKLKSRLEEEEQAKAALMGRIQRLTKLILVSTKNTMSSSTPERPSYRRRHSFGEDELAYLPDRKRGTLIEDDVGSHPSAPSGEEKDDVTNLDELVKEYKRNKRRGMLGWLKLRKPDNLDGLSPNVDSEGSTNGSPSSLTPNRVMLHDMKDSRRNSVSRKDNASALNSFPGRTQAGDLFSVTVGGRQLPPSGTTITDQMDLLREQVKMLAGEVAFCISSLKRLSEQAANNPEDIQVQEGMHKLKDEIYQKKKQIHILEQRMIGSLGHAPSNSEISLTLSKLTTELNEKICELEIKSADNRILQEQLQLKNSENVEMQETILSLRKQINLLLDETSTNSQQFYDREIDYFKERKSDETHMVKNMNAVVSPAHFNQGSSDSIKNSQILMQAAEIENLRQENVRLVEEKDGLEIQTQKLAEEASYAKELASAAAFELRNLAEEVTKLTYENAELTGDLEDAKEARCKSNFCHISSYDSKQSSNNSFQRDGQPEKFGTEVLTEELKKNLSARFQREAALEAALSLKDEIEADLRIALDEIKHQKHDLEDELRSMHVLVAKMRKSGTNIEDKSIVHMPNDIQTKAKNRLPPSNGYSFRKQYKEDETSGSMEDMIALEELKAGFQRERRRCKELERLISRMKGEDIAGMDVMALEELQNLHIEAITNICQAKYANQGF* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5835 1113 MobiDBLite consensus disorder prediction 559 612 - -
Lja1g5835 1113 Coils Coil 681 701 - -
Lja1g5835 1113 PRINTS Kinesin heavy chain signature 330 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g5835 1113 PRINTS Kinesin heavy chain signature 281 299 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g5835 1113 PRINTS Kinesin heavy chain signature 132 153 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g5835 1113 PRINTS Kinesin heavy chain signature 246 263 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g5835 1113 Coils Coil 956 994 - -
Lja1g5835 1113 Coils Coil 735 774 - -
Lja1g5835 1113 MobiDBLite consensus disorder prediction 32 46 - -
Lja1g5835 1113 Coils Coil 826 860 - -
Lja1g5835 1113 MobiDBLite consensus disorder prediction 477 496 - -
Lja1g5835 1113 PANTHER KINESIN-LIKE PROTEIN KIN-7C, MITOCHONDRIAL 51 1098 - -
Lja1g5835 1113 Coils Coil 1052 1079 - -
Lja1g5835 1113 MobiDBLite consensus disorder prediction 1 46 - -
Lja1g5835 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 415 IPR027417 -
Lja1g5835 1113 MobiDBLite consensus disorder prediction 505 532 - -
Lja1g5835 1113 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g5835 1113 Pfam Kinesin motor domain 67 380 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g5835 1113 CDD KISc_CENP_E 61 380 - -
Lja1g5835 1113 ProSiteProfiles Kinesin motor domain profile. 61 380 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g5835 1113 Coils Coil 442 469 - -
Lja1g5835 1113 PANTHER CENTROMERE PROTEIN E 51 1098 - -
Lja1g5835 1113 ProSitePatterns Kinesin motor domain signature. 280 291 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja1g5835 1113 Coils Coil 875 902 - -
Lja1g5835 1113 SMART kinesin_4 59 388 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g5835 1113 MobiDBLite consensus disorder prediction 565 583 - -
Lja1g5835 1113 Coils Coil 382 416 - -
Lja1g5835 1113 Gene3D Kinesin motor domain 51 412 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5835 Lja-Chr1 104835718 104848667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5835 58 703 Miscellaneous Gene Families AT5G06670 58.742 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5835 K11498 - gmx:100817131 1719.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5835 1 104835718 104848667 Lja1g5835 1 104835718 104848667 ECH