Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5780 ATGGACGCTGCTTCGTCTTCTTCGAATCATGCTGAATTCGATTACTTGTTCAAGCTTCTCATGATTGGGGATTCAGGGGTTGGCAAAAGCACGCTGCTTCTCAGCTTCACCTCTGATACGTTTGAGGATCTTTCTCCCACTATCGGTGTGGATTTCAAAGTTAAATACGTTACAATTGGTGGGAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAGGAAAGGTTTAGAACACTTACTAGTTCATATTATAGAGGAGCACAAGGAATAATTATGGTATATGATGTAACTCGACGGGAGACCTTTACAAATCTATCTGATATATGGGCCAAAGAAATTGATCTATACTCTACAAATCAAGACTGTATCAAGATGCTTGTAGGAAACAAAGTTGATAAGGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGGATTGACTTTGCTAGGGAATATGGATGTCTTTATACTGAATGTAGTGCAAAAACCCGAGTAAATGTTGTGCAGTGTTTTGAAGAGCTTGTAATGAAGATTTTGGAGACACCAAGCCTCTTGGCTGATGGCTCATCTGGTATGAAAAAGAACATCTTCAAGCAGAAACCCCCACAGTCTGATGCATCAAATAGTAGCTGTTGTTCATGGTGA 645 0.4 MDAASSSSNHAEFDYLFKLLMIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLYTECSAKTRVNVVQCFEELVMKILETPSLLADGSSGMKKNIFKQKPPQSDASNSSCCSW* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5780 214 Gene3D - 10 212 IPR027417 -
Lja1g5780 214 SMART rab_sub_5 17 181 - -
Lja1g5780 214 ProSiteProfiles small GTPase Rab1 family profile. 12 212 - -
Lja1g5780 214 SMART ran_sub_2 22 214 - -
Lja1g5780 214 ProSiteProfiles small GTPase Rho family profile. 10 179 - -
Lja1g5780 214 PANTHER LD21953P-RELATED 8 213 - -
Lja1g5780 214 ProSiteProfiles small GTPase Ras family profile. 6 214 IPR001806 GO:0003924|GO:0005525
Lja1g5780 214 SMART ras_sub_4 14 181 - -
Lja1g5780 214 TIGRFAM small_GTP: small GTP-binding protein domain 15 173 IPR005225 GO:0005525
Lja1g5780 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 195 IPR027417 -
Lja1g5780 214 PRINTS Transforming protein P21 ras signature 17 38 - -
Lja1g5780 214 PRINTS Transforming protein P21 ras signature 121 134 - -
Lja1g5780 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Lja1g5780 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Lja1g5780 214 PRINTS Transforming protein P21 ras signature 156 178 - -
Lja1g5780 214 CDD Rab18 17 178 - -
Lja1g5780 214 PANTHER BNAA05G18680D PROTEIN 8 213 - -
Lja1g5780 214 Pfam Ras family 18 179 IPR001806 GO:0003924|GO:0005525
Lja1g5780 214 SMART arf_sub_2 1 182 - -
Lja1g5780 214 SMART rho_sub_3 19 181 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5780 Lja-Chr1 102938075 102942942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5780 18 114 EF-hand Containing Proteins AT5G27540 25.773 1.53e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5780 K07910 - gmx:100794330 409.453