Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5763 ATGGTTACAGGAGATGATTTGTACAACGTGATGTGCGCCATGGTGCCTCTATATTTCGCAATGCTGGTAGCTTACGCATCAGTGAAATGGTGCAAAATGTTCACCCCACAGCAGTGCTCCGGCGTCAACCGTTTCGTGGCGGTGTTTGCGATTCCGGTTCTCTCTTTCCATTTCATTTCCATCAACAATCCTTATGAGATGGACGCTAAGTTCATCATAGCGGACACGCTCTCCAAGCTCGTCGTGCTGTTCTTCCTCTTTCTCTGGGCTATTTTTTTTGCTTCTGGATCTCTCGACTGGCTTATCACGCTCTTCTCGCTCGCAACCTTGCCCAACACGCTTGTCATGGGGATTCCTCTACTCCAAGCCATGTACGGCCAATTCACGCAAGGCCTCATGGTGCAACTCGTTGTACTCCAATGCATCATATGGTATACTCTACTGTTGTTTCTATTGGAATACAGAGCAGCGACCCTTTTGATCAAAACCGAGTTCCCTGGGGACACGGCGGCGTCCATAACCAAAATCGAGGTCGACGGCGACGTGATTTCCCTCGACGGCCACGACGTGCCACTGCAAACGCAGTCGGAAACCGACACCCACGGCCGCATCAGCGTGCGAATCCGGCGATCAATCTCCTCAGCTCCGGACTCAACCTCATCAATCGGCAACGCCGTTATCACTCCAAGGCATTCGAATCTCACCAACGCCGATATCTTCTCCATCAACACGCCGCTGCACCTGCTCGACGGCGACCCCTCCTTTGGATACCCGCCGGCGAGCCCGAGGTTATCCGGATGCGCCTCCTCCGACGCGTACTCGCTTCAGCCCACGCCGCGGGCGTCAAATTTCAATGAGACGGAGGTCACGGCGGGAACGCCGGTATGGGGGAGGTCTCCGGTGGGCGGCGGGAGGGTTTCTCGGCAGATGTCGCCGGGGAAATGCCAAGTAGAAGAGAGACAGGGATGCAAGGACATTACGCAGTCAGATAAAGAAATTAGCTTCAGAGACAACATCAAAGTTTCAATGCCAGGGGAAGAAGCTGCAGACACAACTGCTCGTAACCAGAAAATGCCACATGCTTTTGTCATGATAAGGCTTATACTTACAGTAGTGGGAAGAAAACTTTCGCGTAACCCTAATACATATTCTAGTGTATTAGGACTTGTTTGGTCTCTAATCTCCTTCAAATGGAACATGGAAATGCCTAGTCTGATCAAAGCATCTATCAAAATCATCTCGGATGCAAGCCTTGGAATGGCTATGTTTAGCTTAGGGCTTTTCATGGCCCTTCAGCCTCGTATCATTGCTTGTGGTACCAAAAGAGCAGCCATGGGAATGGCCATTCGTTTCGTGTGCGGGCCTCTTGTAATGTCAGCATCCTCCATTGTCATTGGATTGAGAGGGGACAAATTGCACACAGCAATTGTACAGGCTGCACTTCCACAGGGGATTGTACCATTTGTATTTGCAAGGGAATATGGGCTGCATCCTGATATTTTGAGCACAGGGGTTATCTTTGGCATGCTAGTATCCTTACCAATAACTCTCCTATATTACATACTTCTTGGCTTGTGA 1578 0.5038 MVTGDDLYNVMCAMVPLYFAMLVAYASVKWCKMFTPQQCSGVNRFVAVFAIPVLSFHFISINNPYEMDAKFIIADTLSKLVVLFFLFLWAIFFASGSLDWLITLFSLATLPNTLVMGIPLLQAMYGQFTQGLMVQLVVLQCIIWYTLLLFLLEYRAATLLIKTEFPGDTAASITKIEVDGDVISLDGHDVPLQTQSETDTHGRISVRIRRSISSAPDSTSSIGNAVITPRHSNLTNADIFSINTPLHLLDGDPSFGYPPASPRLSGCASSDAYSLQPTPRASNFNETEVTAGTPVWGRSPVGGGRVSRQMSPGKCQVEERQGCKDITQSDKEISFRDNIKVSMPGEEAADTTARNQKMPHAFVMIRLILTVVGRKLSRNPNTYSSVLGLVWSLISFKWNMEMPSLIKASIKIISDASLGMAMFSLGLFMALQPRIIACGTKRAAMGMAIRFVCGPLVMSASSIVIGLRGDKLHTAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLVSLPITLLYYILLGL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5763 525 MobiDBLite consensus disorder prediction 291 321 - -
Lja1g5763 525 TIGRFAM 2a69: auxin efflux carrier 1 525 IPR014024 -
Lja1g5763 525 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 525 - -
Lja1g5763 525 Pfam Membrane transport protein 10 520 IPR004776 GO:0016021|GO:0055085
Lja1g5763 525 PANTHER AUXIN EFFLUX CARRIER COMPONENT 6 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5763 Lja-Chr1 102448766 102471649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5763 1 503 Organic Solute Cotransporters AT1G77110 64.247 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5763 K13947 - gmx:100800139 790.415