Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5762 ATGCACATTCAAACCTGCCACCCCATCAAGACCCTTCCATTGGCATGGACACCAAGAAACAACCACCACTACCGAACACACCGCCACCACCCCCCACCACCCAAGTCCGCCGCCTCCGCCTTACCGGCGCCACTCAAATCCCGAAAGACACACTCAATGCCACCAGAAAAGATGGAGATTTTCAAATCCCTGGAGTCTTGGGCTACTGATTCAGTCCTCCCCCTTCTGAAGCCCGTGGAGGAATGCTGGCAACCACAGCAATTTGTGCCTGACTCGTCACTCCCATTTGACGAGTTCACCGATCAGGTGAAGGAACTCAGGGAGCGGACGAAGGAGCTGCCGGATGAGTATTTTGTGGTGCTGGTCGGTGATATGGTGACGGAGGACGCGCTTCCGACGTACCAGAGCATGATCAATAAACTCGACGGCGTCGGCGATGAGATTGGGTCGAGTCCGAGCCCGTGGGCCGTGTGGACTCGGGCTTGGACGGCGGAGGAGAATAGGCATGGGGATTTGCTCAGGACTTACTTGTATCTTTCTGGTCGGGTAGATATGACCAGGATCGAGAAGACTGTGCAGTACCTCATTAAAGCTGGCATGGACCCAGGGACAGAAAACAACCCATATTTGGGTTTCGTGTACACATCATTCCAGGAGCGAGCAACATTCGTGTCACACGGCAACACCGCGCGTCTCGCAAGGGAAGGCGGCGATCCAGTACTAGCGCGCATATGCGGCACCATAGCAGCAGACGAGAAGCGTCACGAGAATGCATACGCGAGAATTGTCGAGAAGCTTCTAGAAGTAGACCCCGACGGCGCAATGGTGGCCATCGGCGACATGATGGCGAAGAAGATCACGATGCCGGCGCACCTCATGTACGACGGCCAAGATCCAAGGCTGTTCGAGCACTTCGCCGCCGTGGCACAGCGCACCGGCGTGTACACCGCGAATGATTACGCTGATATTCTTGAGAATCTGATTGAACGGTGGAGGTTGGAGAAGCTGGTGGGATTGAACGGTGAGGGGAGGAAGGCGCAGGATTTCGTGTGTGGGCTTGCGCCTAGGATTAGGAGGTTGCAGGAACGGGCTGATGAACGGGCCCGTAAGATGAAGCCTCAAGGGGTTAAGTTTAGTTGGATATTTAATAATGAGGTGGTTTTGTGA 1167 0.5501 MHIQTCHPIKTLPLAWTPRNNHHYRTHRHHPPPPKSAASALPAPLKSRKTHSMPPEKMEIFKSLESWATDSVLPLLKPVEECWQPQQFVPDSSLPFDEFTDQVKELRERTKELPDEYFVVLVGDMVTEDALPTYQSMINKLDGVGDEIGSSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMTRIEKTVQYLIKAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAREGGDPVLARICGTIAADEKRHENAYARIVEKLLEVDPDGAMVAIGDMMAKKITMPAHLMYDGQDPRLFEHFAAVAQRTGVYTANDYADILENLIERWRLEKLVGLNGEGRKAQDFVCGLAPRIRRLQERADERARKMKPQGVKFSWIFNNEVVL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5762 388 SUPERFAMILY Ferritin-like 45 387 IPR009078 -
Lja1g5762 388 PANTHER STEAROYL-[ACYL-CARRIER-PROTEIN] 9-DESATURASE 6, CHLOROPLASTIC 39 387 - -
Lja1g5762 388 MobiDBLite consensus disorder prediction 21 53 - -
Lja1g5762 388 Pfam Fatty acid desaturase 56 382 IPR005067 GO:0006631|GO:0045300
Lja1g5762 388 Gene3D Ribonucleotide Reductase, subunit A 42 388 IPR012348 GO:0016491
Lja1g5762 388 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 39 387 IPR005067 GO:0006631|GO:0045300
Lja1g5762 388 CDD Acyl_ACP_Desat 56 364 IPR005067 GO:0006631|GO:0045300
Lja1g5762 388 PIRSF Dlt9_acylACP_des 15 388 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5762 Lja-Chr1 102431511 102433877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5762 37 386 Acyl Lipid Metabolism Gene Families AT1G43800 77.208 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5762 K03921 - gmx:100037478 620.157