Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5743 ATGGAATCGAAGTGGATCTTGAAGGAAATCAACGATTTGGAGAAGGATCCTCCCACCTATTGCAGTGCCGGTCCTGTTGCTGATGATATGTTTCATTGGCAAGGAACAATCATGGGTCCTCTAGACAGTCCTTATGAGGGAGGTGTTTTCTCACTTGTTATTAATCTCCCTCCAGATTATCCCTTCAAGCCACCCAAGGTTGCATTCAAGACAAAAGTTTACCACCCAAACATAGATAGCAATGGAAAAATTTGCCTTGATATATTGAAGGATCAATGGAGCCCCGCTCTAACCATTTCCAAGGTGCTGCTCTCAATTTCTTCCTTTTTGACGGACCCAAATCCCGATGATCCTTTGGTCCCTGAAATTTCCCACATCTACAAGACAGACAGGAAACAGTACGAGTCAAATGCAAGAAGTTGGACTCAGAAATATGCCATGGGCTAA 447 0.4362 MESKWILKEINDLEKDPPTYCSAGPVADDMFHWQGTIMGPLDSPYEGGVFSLVINLPPDYPFKPPKVAFKTKVYHPNIDSNGKICLDILKDQWSPALTISKVLLSISSFLTDPNPDDPLVPEISHIYKTDRKQYESNARSWTQKYAMG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5743 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Lja1g5743 148 SMART ubc_7 4 147 - -
Lja1g5743 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Lja1g5743 148 SUPERFAMILY UBC-like 4 147 IPR016135 -
Lja1g5743 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Lja1g5743 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Lja1g5743 148 Pfam Ubiquitin-conjugating enzyme 6 141 IPR000608 -
Lja1g5743 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
Lja1g5743 148 CDD UBCc 3 142 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5743 Lja-Chr1 101984869 101987952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5743 4 114 Miscellaneous Gene Families AT3G17000 35.897 2.98e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5743 K06689 - sind:105174683 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5743 1 101984869 101987952 Lja1g5743 1 101984869 101987952 ECH