Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5698 ATGTTGACTCAGATTCAATGGCTCCATTCCGAACTGAGCAACGTTTGCAAGTCCCTTTTGAGAGCCAAACAGTTACATGCTTGCCTTTTGAAGACCCATCTCTCACAAGACCCCTTTTATGCAACTAAACTTGTAAGACTCTATGCAGCTACCAATGACATCAACTCTGCCTACCATGTGTTCGACAAAATGTCCACTCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTTTCGCGTTGTCTCAAAGATTTGACAATGCAGTTTCTCTATTCAGAACCATGCTTGGTGCTGACATAAAACCTGACAATTACACTTTTGCTTGTGTTATACGTGCTTGCGCTGATAACTTTGATTTAGGTATGCTTAGACTTGTTCATGGAGGTGCTGTAGCTTCTGGGTTAGGACTGGACGCTATTTGTTGCAGTGCACTTGTGAGTGCTTATTCAAAACTAGGCCTTGTTCATGAAGCTAATAGAGTGTTCAATGGGATTGCTGAACCGGATTTGGTTTTGTGGAACTCACTGATTTCTGGTTATGGGTGTTCCGCTGCGTGGGATGTGGGAATGCAAATGTTTAGCTCAATGAGACTTGTTGGAACCAGGCCTGATGGGTATACCCTGGCTGGGTTGCTTGGGGGCATTGCAGATCCTAGCTTGCTTTGCATTGGCCAAGGATTACATGGTTTGAGTCATAAGAGTGGTCTTGATTCTGATTCTCATGTGGGTAGTTTACTGGTGAGTATGTACTCGAGATGTAAGTGCATGGATTCAGCATATAGAGTATTTTGCAGTATTTCCAATCCTGATTTGGTCACATGGTCTGCTCTTATATCTGGGTATTCTCAGTGTGGGGAGCACGAGAAGGTACTGCTCTTTTTCAGAAAATTAATCATGGAGAGAAAGAAGCTAGATTCTATTTTGGTTGCCACTGTATTGGCTTCTATAGCTCAGACAGCGAATGTAAGACCGGGATGTGAGATACATGGCTATGTAATTCGGCATGGATTGGAATCAGATGTCAAGGTCTCCTCTGCTCTCATAGATATGTATTCAAAGTGTGGTTTTTTGCACTTTGGAATTTGTGTGTTCAGGCTAATGCCAGAACGGAATATAATTTCTTATAATTCAGTCATTTCGGGGCTTGGATTGCATGGATGTGCTTCAGAGGCTTTCCGGATGTTTGACAGGATTCTGGAGAAAGGATTGGCACCAGATGCAGCCACATTCTCTGCTCTCCTTGGTGCTTGTTGTCATGCTGGCCTTGTCAATGAAGGCCGCGAGATTTTCCAGAGAATGAAAGATGAATTTAACATCAAAGCTAGGCCTGAGCACTATGTTTACATGGTGAAGCTTCTTGGAAGTGCTGGGGAGTTAGAAGAGGCTTACAATCTCACTCAGTCCTTACCAGAACCAGTAGACAAGGCCATCCTGGGAGCCTTGTTATCATGCTGTAATTCCTGTGGAAATTCTGAGCTAGCAGAAACTGTAGCTCAGAAGCTTTTTCAAAATAATCCTGCTGATAATGCTTTCAAGGTTATGCTTTCTAATATATATGCTGGTGATGGGAGGTGGGATGATGTGAAGAATTTGAGGGATAAAATGACAGGAGGACTGAGAAAAATGCCCGGGCTAAGCTGGATTGAAGGAAGTTATTGCTAA 1662 0.432 MLTQIQWLHSELSNVCKSLLRAKQLHACLLKTHLSQDPFYATKLVRLYAATNDINSAYHVFDKMSTRSVYLWNSMIRAFALSQRFDNAVSLFRTMLGADIKPDNYTFACVIRACADNFDLGMLRLVHGGAVASGLGLDAICCSALVSAYSKLGLVHEANRVFNGIAEPDLVLWNSLISGYGCSAAWDVGMQMFSSMRLVGTRPDGYTLAGLLGGIADPSLLCIGQGLHGLSHKSGLDSDSHVGSLLVSMYSRCKCMDSAYRVFCSISNPDLVTWSALISGYSQCGEHEKVLLFFRKLIMERKKLDSILVATVLASIAQTANVRPGCEIHGYVIRHGLESDVKVSSALIDMYSKCGFLHFGICVFRLMPERNIISYNSVISGLGLHGCASEAFRMFDRILEKGLAPDAATFSALLGACCHAGLVNEGREIFQRMKDEFNIKARPEHYVYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNSCGNSELAETVAQKLFQNNPADNAFKVMLSNIYAGDGRWDDVKNLRDKMTGGLRKMPGLSWIEGSYC* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5698 553 Pfam PPR repeat family 68 115 IPR002885 -
Lja1g5698 553 Pfam PPR repeat family 371 419 IPR002885 -
Lja1g5698 553 Gene3D Tetratricopeptide repeat domain 389 552 IPR011990 GO:0005515
Lja1g5698 553 Gene3D Tetratricopeptide repeat domain 7 124 IPR011990 GO:0005515
Lja1g5698 553 Gene3D Tetratricopeptide repeat domain 125 222 IPR011990 GO:0005515
Lja1g5698 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lja1g5698 553 PANTHER OS01G0545900 PROTEIN 5 549 - -
Lja1g5698 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lja1g5698 553 Pfam E motif 490 549 IPR046848 -
Lja1g5698 553 Gene3D Tetratricopeptide repeat domain 227 325 IPR011990 GO:0005515
Lja1g5698 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Lja1g5698 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Lja1g5698 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 549 - -
Lja1g5698 553 TIGRFAM PPR: pentatricopeptide repeat domain 272 300 IPR002885 -
Lja1g5698 553 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Lja1g5698 553 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Lja1g5698 553 TIGRFAM PPR: pentatricopeptide repeat domain 409 436 IPR002885 -
Lja1g5698 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Lja1g5698 553 Pfam PPR repeat 171 197 IPR002885 -
Lja1g5698 553 Pfam PPR repeat 272 298 IPR002885 -
Lja1g5698 553 Pfam PPR repeat 141 163 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5698 Lja-Chr1 100751856 100755010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5698 29 549 Glycoside Hydrolase AT3G49170 32.270 1.63e-84 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5698 - - gmx:100820049 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5698 1 100751856 100755010 Lja1g5698 1 100751856 100755010 ECH