Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5675 ATGAACGGTGGTTCACCTGATCCATTGGATTCGTTCCCACGGTTGCGGCTTCGCGAATCGGACGGTGCATCGCGCCGCTCCTCCTCCTCCTGCGACGGCGACTCCGAGTTCGAGCGCTACTGCAGCGCCAACTCGGTCATGGAGACTCCGAGCACCAGCATGAGCATGCGCAGCGCCATCACCGTCTTCCACGACTTCTCCGATTTCGATTTCACCAGGGGCGGCGCCGCCGCCTCCGACGACGTTAACAGCGGCTCGGAGAATTTCAGTTCGGCGGCGGAGACCAAGTTCAGGACGCAGCGGAACTTGAGGTACGGTTCCAGCGGATTGGAGATGTATGGTGACGGCGGTGACGAGCTTTCTATGACGGAGCTCGATTCGTCGGAGTTTATCGGGTTTAACCGGAGGGAAGAGGGTGAGGGGAATGAGAGTGATGGTGAAGGTGGGGAAAGAGAGGTGGAGGGGGAAGAAGGTGAGGAATTTTCAGAGGGCGAGGAATCGATGTACAACTATGGGAGTGAGGGTGAGAATAGGAATGAATTCTATTTGAGGCAGGGTGAAAATGCGAATGAGTTCTATGCATCTAACAGTGGTGTGTGCTATCATGAGGAAATTGAAGTGAGAAACGATGATCATCCTTTGTTTATGAATTCTTCTGTTGCATTTGGTTCGCATGATTTGGATGATTTTTTGCTGCAAAATGGTCCCATTTCTGGTATGTCTGATCTATTTCGGAAGCCGCAAGAAAAGGATGATCAAGTTGAAGAGGGTGCAGTGAGTTCAGGTGGAAAAGAGGGGAGAATAGATGAAAAGGATGAAGAAGTTGAGGAAACTAAAGATGGTGGTGATTCAGAAGATGTGAAAGATGTGAAAGATGTCAGGGATAGGGACAGGGACAAGGACAATGACATTCTTGCTGAATACAGTTGTTCTCAAGGTTCTCATAACTCCGAGGTCTGTCAAGAAGGTTTGGATATGGTGCCAGAAGAGGTTCCCCAGAATAGGAGTTTGGATGTTACTGATGGTGTAAGCAAGGAAAAGGGCGGTGATGAAGCTATTGCCACTAGAAATGCTCAATGTGTAAACCCTGAGGTGGATAATTCCATGTCTGAGTTTGATTACTTTGGTGATAGGGGAGTTGATCACAATTCTTCCGATCCACGCATCCATGTAGGGAGTGTGAATGCAAAATCATTTGAGAATCTTGAACCAATTGTGCTGCCTTCAAGTAGTGGAATGGGGGAAACATTAGAGAGCTCTTCCACTTCGACAAGTTTGTTAGAAAAAGGTCCTGTGATGTCTAAGAAAGAGGACTTTGAGCTAAATGAATTCTATGATGAGGTTGTTCAGGAGATGGAAGAAATTTTACTGGACTCTGTGGATTCTCCTGCAGCTAGGCTTTCCATGGGTAACAGATTTTTTGAACCACAATTGTCCATGCCTTTAAGAGATGGTGGCATGACTGCTTCTACTTCTAGTACAGATGATGCATACCTGCTAGTTCAGCGCCCAAGAAGAATAAATAGGATTGAAGTTGTAGGTGCAAGGCAGAAGAAAGGGGATGTTTCTCTTAGTGAAAGATTGGTTGGGGTGAAGGAATACACTGTTTATAAAATTAAAGTGTGGAGTGGCAAGGATCAGTGGGAGGTTGAAAGGAGATATCGTGATTTCCTCACTCTCTATCGTTGCTTGAAAACCTTATTCAATGAGCAGGGCTGGATTTTACCTTTGCCTTGGTTGTCTGTTGAAAAGGAATCCAAGATATTTAGAAGTGCATCTCCTGATATTATTGTGAAAAGAAGTGATCTCATTCAAGAGTGTTTACAGTCTATTCTCTGTACCAGGTTTTTTTCAAGTCCTCCAAGACCATTGATTTGGTTTTTGTCCCCTCAAGATGCACATCCTATTTCACCTGTGTCAAATGCACCTGCGCCTCAGTCTTCTTTTACAAGAGGGGAAAACATTCGAAACTTTTCCACTTTAGGGAAGACCATATCACTTATAGTTGAAATGCCGTCAAATAAATCTATAAGACAGTTGTTAGAAGCACAACATTACACTTGCGCTGGATGCCATAAGCATTTTGATGATGGAAAAACTTTGATTTGGGATTTTGTACAGACATTGGGATGGGGGAAGCCTCGACTTTGTGAATATACTGGTCAATTGTTCTGCTCTTCTTGCCATACAAATGATACTGCAGTCTTGCCAGCAAGGGTTTTACATCATTGGGATTTCACTCGTTATCCTGTTTCTCAGATGGCAAAGTCTTATCTGGACTCTATACATGAACAGCCTATGCTTTGTGTCACCGCAGTTAATCCCTTCCTTTTGTCAAGGGTCCCAGCCTTGCTTCATGTTATGAATGTCAGAAAAAAGATAGGTATAATGCTTCCATATGTTCGCTGCCCATTCCGAAGGTCTATCAACAGAGGGCTTGGAAACCGGAGATATCTTCTTGAAAGCAATGACTTTTTTGCTCTCAAAGATTTGCTTGATCTTTCCAAAGGAGTCTTTGCCGCACTTCCTGTAATGGTGGAAACTCTGTCAAGGAAAATCCTGGAACACATTACTGACCAATGCCTCATATGCTGTGATGTGGGAGACCCCTGTAGCGCCCGACAAGATTGCAGTGACCCATCGTCTCTCATTTTCCCATTTCAGGAAGACGATATTGAAAGGTGCAAAGCTTGTCAATTGGTTTTCCACAAGCGTTGTTTTAAAAAGATTTCTAATTGTCCTTGTGGTGCACAACTGAGATTGAATGTGACGAGGAGCTTAACCAACAGAGCAAGCCATAGAGGAGGAGGTGAAACAAGAGGAACTTTGGACTTCTTAGGCAGAGGACTGAGTTCTGGTTTGTCATCTAAGTTCCTCTCTGGACTATTTACGAAGGAAAAGCCTGAGAAGACTGGGGAGCATAAAGGCGAAAATATCATCTTAATGGGTTCCTTGCCAAGCACTTCTTTGTGA 2973 0.447 MNGGSPDPLDSFPRLRLRESDGASRRSSSSCDGDSEFERYCSANSVMETPSTSMSMRSAITVFHDFSDFDFTRGGAAASDDVNSGSENFSSAAETKFRTQRNLRYGSSGLEMYGDGGDELSMTELDSSEFIGFNRREEGEGNESDGEGGEREVEGEEGEEFSEGEESMYNYGSEGENRNEFYLRQGENANEFYASNSGVCYHEEIEVRNDDHPLFMNSSVAFGSHDLDDFLLQNGPISGMSDLFRKPQEKDDQVEEGAVSSGGKEGRIDEKDEEVEETKDGGDSEDVKDVKDVRDRDRDKDNDILAEYSCSQGSHNSEVCQEGLDMVPEEVPQNRSLDVTDGVSKEKGGDEAIATRNAQCVNPEVDNSMSEFDYFGDRGVDHNSSDPRIHVGSVNAKSFENLEPIVLPSSSGMGETLESSSTSTSLLEKGPVMSKKEDFELNEFYDEVVQEMEEILLDSVDSPAARLSMGNRFFEPQLSMPLRDGGMTASTSSTDDAYLLVQRPRRINRIEVVGARQKKGDVSLSERLVGVKEYTVYKIKVWSGKDQWEVERRYRDFLTLYRCLKTLFNEQGWILPLPWLSVEKESKIFRSASPDIIVKRSDLIQECLQSILCTRFFSSPPRPLIWFLSPQDAHPISPVSNAPAPQSSFTRGENIRNFSTLGKTISLIVEMPSNKSIRQLLEAQHYTCAGCHKHFDDGKTLIWDFVQTLGWGKPRLCEYTGQLFCSSCHTNDTAVLPARVLHHWDFTRYPVSQMAKSYLDSIHEQPMLCVTAVNPFLLSRVPALLHVMNVRKKIGIMLPYVRCPFRRSINRGLGNRRYLLESNDFFALKDLLDLSKGVFAALPVMVETLSRKILEHITDQCLICCDVGDPCSARQDCSDPSSLIFPFQEDDIERCKACQLVFHKRCFKKISNCPCGAQLRLNVTRSLTNRASHRGGGETRGTLDFLGRGLSSGLSSKFLSGLFTKEKPEKTGEHKGENIILMGSLPSTSL* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5675 990 MobiDBLite consensus disorder prediction 410 431 - -
Lja1g5675 990 PANTHER PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN 52 990 - -
Lja1g5675 990 MobiDBLite consensus disorder prediction 234 300 - -
Lja1g5675 990 MobiDBLite consensus disorder prediction 412 429 - -
Lja1g5675 990 MobiDBLite consensus disorder prediction 244 274 - -
Lja1g5675 990 Pfam PX domain 542 619 IPR001683 GO:0035091
Lja1g5675 990 MobiDBLite consensus disorder prediction 131 174 - -
Lja1g5675 990 MobiDBLite consensus disorder prediction 75 96 - -
Lja1g5675 990 ProSiteProfiles PX domain profile. 515 634 IPR001683 GO:0035091
Lja1g5675 990 SMART DUF4206_2 715 922 IPR025258 -
Lja1g5675 990 MobiDBLite consensus disorder prediction 149 164 - -
Lja1g5675 990 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g5675 990 Pfam Putative zinc-RING and/or ribbon 715 918 IPR025258 -
Lja1g5675 990 MobiDBLite consensus disorder prediction 281 300 - -
Lja1g5675 990 Gene3D - 516 635 IPR036871 GO:0035091
Lja1g5675 990 PANTHER DIFFERENTIALLY EXPRESSED IN FDCP 8 HOMOLOG 52 990 - -
Lja1g5675 990 MobiDBLite consensus disorder prediction 967 990 - -
Lja1g5675 990 MobiDBLite consensus disorder prediction 131 148 - -
Lja1g5675 990 CDD PX_domain 510 612 - -
Lja1g5675 990 SUPERFAMILY PX domain 528 633 IPR036871 GO:0035091
Lja1g5675 990 MobiDBLite consensus disorder prediction 79 96 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5675 - - lja:Lj1g3v0395780.2 1603.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5675 1 100217728 100224272 Lja1g5675 1 100217728 100224272 ECH