Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5652 ATGAACACTCATCCAAACACTGCTTCCAATTCCATGAAGAAATCGTTATCAAGAGGCTCCGAGTCATCGACTCAGTTCGAATCGCCGCACCATTTTTCCTCTCCGACTCTATGGGTACCCGAATCGACCGAGTCGCCGGAGTATCGGTCACCTCAGAACTCACCGGGAGTGTGGGTCGACAATTCGTTGGCGGTGGTGCCAGTCAAAAAGTCCGCTCCCGGTCCCGGGAAAGCTTCGGAGCGCCAGAAGCCGCCGGAGAACGCGGCATCGGCGGCGGTGACTGTGTTCAACCCGACGACGACGAGGGAGGAGCCCCAGCGGCCGGCGACGAAGGTGGGAGAGCGGAGATCGAGATCGGCTCCGGCAGGGTGGAAGGCGGAGGAAGTGGTGAGGAAGGTGGCGCTAGGGTTTCGGCTGAGCGAGGTGGCGGTGTGTCTGATTTCGTTTTCGGTTATGGCTGCGGATCGGACTCAAGGTTGGAGTGGCGATTCCTATGATCGTTACAAAGAGTACAGGTATTGTTTATGTATGAATGTGATAGGATTTGCACACTCAGGATTACAAGTATGTGATCTGGCATGTCAGCTAGTCACAGGGAAACACATAATCAGCCACCACCTTCGGTACCACTTTGATTTCTTCATGGATCAGGTTCTGGCATATCTTTTGATATCAGCATCATCCTCTGCAGCCACACGGGTCGACGATTGGCAATCAAATTGGGGGAAAGACGAGTTCACAGAGATGGCCACTGTTTCAGTTGGGATGTCCTTCCTTGCTTTTGCTGCCTTTGCCATGAGCTCACTCATCTCTGGTTACATTCTCTGTACCCGCAGCTCCATGTGA 846 0.5366 MNTHPNTASNSMKKSLSRGSESSTQFESPHHFSSPTLWVPESTESPEYRSPQNSPGVWVDNSLAVVPVKKSAPGPGKASERQKPPENAASAAVTVFNPTTTREEPQRPATKVGERRSRSAPAGWKAEEVVRKVALGFRLSEVAVCLISFSVMAADRTQGWSGDSYDRYKEYRYCLCMNVIGFAHSGLQVCDLACQLVTGKHIISHHLRYHFDFFMDQVLAYLLISASSSAATRVDDWQSNWGKDEFTEMATVSVGMSFLAFAAFAMSSLISGYILCTRSSM* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5652 281 MobiDBLite consensus disorder prediction 1 120 - -
Lja1g5652 281 MobiDBLite consensus disorder prediction 1 59 - -
Lja1g5652 281 MobiDBLite consensus disorder prediction 92 106 - -
Lja1g5652 281 PANTHER CASP-LIKE PROTEIN 67 281 - -
Lja1g5652 281 Pfam Casparian strip membrane protein domain 129 263 IPR006702 -
Lja1g5652 281 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 67 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5652 Lja-Chr1 99306153 99308099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5652 - - gmx:100789870 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5652 1 99306153 99308099 Lja4g2264 4 24903300 24905414 ECH
Lja1g5652 1 99306153 99308099 Lja1g5652 1 99306153 99308099 ECH
Lja4g2264 4 24903300 24905414 Lja1g5652 1 99306153 99308099 PCT