Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5648 ATGAAGATTCACTTCTTCTGCCTTCTATTGTCACTCTCATCTTTCCATGTTTCTCTAGCAATAACCACTATCAGCAAAGGAACCCCACAACAAACACAAGAAAATTCCAAGCAGATAGTAAACCCTTTCAGCCCCAAAGCCTCTCTCATTCGTTACTGGAACAAACACATCTCCAACAAGCAGACAATTCCTCATTTTCTTCTCTCTAAAGCTTCCACTCTCACTCCACAACAATATGCAACTCTCATGAACCTCCTCAACCAAAAACAACATAAACCCTTCTTCTCTTATAAGGAGCTTCACAACTCCCTATGCACCACACCAAACTTATTATGTTCCTTCGACGAGGACCAAAACCAAAATGACGCAAACATTACCAAAGCCGGCCGCGGTGACGCCGACTTCACCATCTATTCCAACAAACGCTTCTCCAACTACGGCTCCTCCCGAGCCGGCGGGTTCAACACGTTCAAGAACTACTCGAACGGGCTGAACACCAACCGCGACTGGTTCAAAATTTACAGCGCCGCCACAACCCGCCACGGCGACCAGTTCAAAAGCTACGCCGAGAACGGCAACATTGCCAACGCCAACTTCACCAGCTACGGCGCCGGCGCCACCTCCGGTTCCGGCGACTTCGCCAGCTACGACAAGCTCGTCAACGTCCCCAACCTCGGCTTCACCACCTACTACTCCGCCGCCGCAAATCACAAGCTCTCGTTCTCCAGCTACGGCAACGAAACAAACTCCGGCTCACAATCATTCACCAGCTACGGCAAACGCGTCCGCGGCGGAACCAGCGATTTCACAAACTACGCCGCCGGATCCAACATTCTGCAATCCTCATTCACCGGTTACTCTGAGTTAGGATCCGGAAAAACGAACGATTCGTTCAGATCCTACAGTTTCAACGGCAACAACCCCCGCAACAGCTTCAAAAGCTACGGCACCGGATCCACCTCCGCCACCGACACATTCGTCAGCTACCGGAACCGCGCCAACGTCGGCGACGACACGTTCCAGAGCTACGCCGGGAAATCAAGCTCCGGCGCCGCCACGTTTGTGAACTACGGCCAGTCGTTCAACGTCGGAAACGACACATTCACCGAGTACGGGAAAGGCTCTTCCGGTAAGACCGTGTTTGGGTTCAAGATTTACGGGTTGGGACGCGCGTTCAAAGGGTACAACAAGCAAGGCGCGTCGTTTTCTGCGTACAGCAATTTCAGCGTGACCAGTGGCAGAGTTGTAAATAGATGGGTTGAGCCGGGTAAATTCTTTAGGGAGTCGATGTTAAAAGAAGGGAATGTGATAGTTATGCCAGATATTGAGGATAAAATGCCTCAAAGGTCGTTTTTACCCCTGGCAGTTACGTCAAAATTGCCGTTTTCGTTGTTGAGGCTCGGAGAAATGAGGGAGATTTTCCACTCGAGGGAGGGATCCGCAAGTGAGCGCGTGATTGTTAATGCGCTGGCGGAATGCGAGAGGTTGCCGAGCCGTGGCGAGACAAAGCGGTGTGTTGGGTCGCTAGAGGAGATGGTGGAGTTTGTTGTCTCGGTGGTGGGTCGCAATGCGGTTGCGAGAGCCACCGAGAATGTGAAGGGTTCGAGGAAGAACGTGATGATTGGGAGGGTTTATGGTGTGGATGGTGGAAAAGTGACGAAGTCAGTTTCGTGTCACCAGAGTTTGTACCCTTACTTGCTGTATTATTGTCACTCTGTCCCCCAAGTGAGAGTTTATGAAGCTGAAATTCTTGACGTGGACACCAAGTTGAAGATTAATCATGGGGTTGCCATTTGTCACCTGGACACGTCAGCGTGGGGCCCAGAACATGGAGCTTTCGTGGCACTTGGGGCTGGACCCGGGAAAATTGAGGTGTGCCACTGGATTTTCCAAAACGACATGACGTGGACCACTGCCGAGTGA 1923 0.5153 MKIHFFCLLLSLSSFHVSLAITTISKGTPQQTQENSKQIVNPFSPKASLIRYWNKHISNKQTIPHFLLSKASTLTPQQYATLMNLLNQKQHKPFFSYKELHNSLCTTPNLLCSFDEDQNQNDANITKAGRGDADFTIYSNKRFSNYGSSRAGGFNTFKNYSNGLNTNRDWFKIYSAATTRHGDQFKSYAENGNIANANFTSYGAGATSGSGDFASYDKLVNVPNLGFTTYYSAAANHKLSFSSYGNETNSGSQSFTSYGKRVRGGTSDFTNYAAGSNILQSSFTGYSELGSGKTNDSFRSYSFNGNNPRNSFKSYGTGSTSATDTFVSYRNRANVGDDTFQSYAGKSSSGAATFVNYGQSFNVGNDTFTEYGKGSSGKTVFGFKIYGLGRAFKGYNKQGASFSAYSNFSVTSGRVVNRWVEPGKFFRESMLKEGNVIVMPDIEDKMPQRSFLPLAVTSKLPFSLLRLGEMREIFHSREGSASERVIVNALAECERLPSRGETKRCVGSLEEMVEFVVSVVGRNAVARATENVKGSRKNVMIGRVYGVDGGKVTKSVSCHQSLYPYLLYYCHSVPQVRVYEAEILDVDTKLKINHGVAICHLDTSAWGPEHGAFVALGAGPGKIEVCHWIFQNDMTWTTAE* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5648 640 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 1 640 - -
Lja1g5648 640 PANTHER POLYGALACTURONASE-1 NON-CATALYTIC SUBUNIT BETA 1 640 - -
Lja1g5648 640 Pfam BURP domain 425 637 IPR004873 -
Lja1g5648 640 SMART BURP_2 423 639 IPR004873 -
Lja1g5648 640 ProSiteProfiles BURP domain profile. 425 639 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5648 Lja-Chr1 99237457 99239826 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5648 - - lja:Lj1g3v0411530.1 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5648 1 99237457 99239826 Lja1g5648 1 99237457 99239826 ECH