Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5636 ATGGCTTCAACAGCCTCAAGGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTAGGGAAAACTTGCATGCTCATTTGCTACACTAGCAACAAATTCCCCACGGACTATATCCCCACAGTGTTTGATAATTTCAGTGCAAATGTGGTCATGGAAGGCATTACTGTCAATTTAGGCCTCTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCTTTGAGCTACAGAGGGGCAGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGCCGTGCGAGTTATGAGAATGTGTTGAAAAAGTGGATCCCTGAGCTCCAGCATTTTGCCCCCGGCGTCCCGGTGGTACTAGTTGGAACCAAACTGGATCTCCGCGAAGACAAGCACTATTTGGCTGATCATCCTGGCCTGGTGCCCGTGACTTCTGAGCAAGGTGAAGAACTCAGCAAACAAATTGGAGCGACCTATTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTCAAAGGAATATTTGATGCTGCCATCAGGATGGTCATCAAGCCTCCACAAAAGCAACAGGAGAAAAGGAAAAAACCACGGCGAGGCTGTTTCCTAAATGTCCTCTGTGGAAGGAACATTGTTCGACATAACTGA 636 0.4701 MASTASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVMEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELSKQIGATYYIECSSKTQQNVKGIFDAAIRMVIKPPQKQQEKRKKPRRGCFLNVLCGRNIVRHN* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5636 211 PRINTS Transforming protein P21 ras signature 49 71 - -
Lja1g5636 211 PRINTS Transforming protein P21 ras signature 9 30 - -
Lja1g5636 211 PRINTS Transforming protein P21 ras signature 32 48 - -
Lja1g5636 211 PRINTS Transforming protein P21 ras signature 157 179 - -
Lja1g5636 211 PRINTS Transforming protein P21 ras signature 111 124 - -
Lja1g5636 211 ProSiteProfiles small GTPase Rab1 family profile. 4 211 - -
Lja1g5636 211 PANTHER - 1 204 - -
Lja1g5636 211 PANTHER RHO FAMILY GTPASE 1 204 IPR003578 GO:0005525|GO:0007264
Lja1g5636 211 Pfam Ras family 10 180 IPR001806 GO:0003924|GO:0005525
Lja1g5636 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Lja1g5636 211 SMART rab_sub_5 9 182 - -
Lja1g5636 211 ProSiteProfiles small GTPase Ras family profile. 4 202 IPR001806 GO:0003924|GO:0005525
Lja1g5636 211 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Lja1g5636 211 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Lja1g5636 211 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Lja1g5636 211 Gene3D - 2 200 IPR027417 -
Lja1g5636 211 CDD Rop_like 8 180 - -
Lja1g5636 211 Coils Coil 207 211 - -
Lja1g5636 211 SMART ras_sub_4 6 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5636 Lja-Chr1 98916088 98920823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5636 9 194 EF-hand Containing Proteins AT5G27540 23.280 5.86e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5636 K04392 - gmx:100499774 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5636 1 98916088 98920823 Lja1g5636 1 98916088 98920823 ECH